PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G292900.1.p
Common NameGLYMA_02G292900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 366aa    MW: 42285.9 Da    PI: 8.4586
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G292900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.71e-056788223
                         EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                         +C+ Cg +F+ + +L +H+++H
  Glyma.02G292900.1.p 67 TCEECGATFKKHAYLLQHMQSH 88
                         6*******************99 PP
2zf-C2H216.91.8e-0594118123
                          EEET..TTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                          ++C   dC  s++rk++L++H+  H
  Glyma.02G292900.1.p  94 FVCAvdDCQASYRRKDHLTQHLLQH 118
                          89*******************9887 PP
3zf-C2H214.50.0001123148123
                          EEET..TTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                          +kCp  +C+  Fs +sn+krH    H
  Glyma.02G292900.1.p 123 FKCPveNCNSEFSLQSNMKRHTEEiH 148
                          89*******************87766 PP
4zf-C2H219.72.2e-06164188123
                          EEET..TTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                          + Cp   Cgk+F+  s+L++H  +H
  Glyma.02G292900.1.p 164 HMCPeiGCGKVFRYASQLQKHEDSH 188
                          68*******************9888 PP
5zf-C2H216.72.1e-05255280123
                          EEET..TTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                          ++C+   C+ +FsrksnL +H +  H
  Glyma.02G292900.1.p 255 FQCEfkGCSCTFSRKSNLDKHKKAvH 280
                          89*******************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355322244IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.8082249IPR007087Zinc finger, C2H2
SuperFamilySSF576673.69E-1065118No hitNo description
SMARTSM003550.016688IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.3396693IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-66687IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.3E-1188120IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.22494121IPR007087Zinc finger, C2H2
SMARTSM003550.03394118IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028096118IPR007087Zinc finger, C2H2
SuperFamilySSF576674.64E-6104149No hitNo description
Gene3DG3DSA:3.30.160.601.2E-5121149IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.029123148IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.201123153IPR007087Zinc finger, C2H2
PROSITE patternPS000280125148IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.9E-7159188IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.54E-5161190No hitNo description
SMARTSM003550.0014164188IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.907164193IPR007087Zinc finger, C2H2
PROSITE patternPS000280166188IPR007087Zinc finger, C2H2
SMARTSM003551.1196221IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280198221IPR007087Zinc finger, C2H2
SMARTSM0035530224245IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.4E-6236277IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.94E-9237294No hitNo description
PROSITE profilePS5015712.819255285IPR007087Zinc finger, C2H2
SMARTSM003550.0042255280IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280257280IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.6E-5279309IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003558.3286312IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280288312IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MESTNSVALT QKRPKYKDIR RYYCEYCGIC RSKKTLITSH INLHHKEEYE KARAKRDPEA  60
EASKSNTCEE CGATFKKHAY LLQHMQSHSL ERPFVCAVDD CQASYRRKDH LTQHLLQHEG  120
KIFKCPVENC NSEFSLQSNM KRHTEEIHDD SSTTTSSDKS HKQHMCPEIG CGKVFRYASQ  180
LQKHEDSHVN LESVDMVCLE PGCLKHFPNV QCLQAHVKSS HQYMTCDICG TKQLKKNIKR  240
HLRSHEAEGS SSETFQCEFK GCSCTFSRKS NLDKHKKAVH LNVKPFACGF PDCGMRFAYK  300
HVRDNHEKTA KHVFTLGDFE EADEEFRSRP RGGRKRTCPT VEVLIRKRVT PPSQLEHWLF  360
MQDSE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A7e-147022319162PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D7e-147022319162PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.381360.0leaf| somatic embryo
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Both isoforms 1 and 2 transcripts are expressed in seedlings and both TFIIIA and TFIIIA-C are present at similar ratios in 10-day-old seedlings (at protein level). In correlation with the reorganization of 5S rDNA chromatin to a mature state, full-length isoform 1 protein TFIIIA with transcriptional activity accumulates and permits de novo transcription of 5S rRNA. Isoforms 1 and 2 transcripts accumulate in various tissues of the reproductive phase, including flowers and siliques, but only isoform 2 is present in mature seeds. In flowers, both TFIIIA and TFIIIA-C are present at similar ratios (at protein level). Very low amounts of TFIIIA are found in extracts from fresh siliques compared to TFIIIA-C. The amount of full-length TFIIIA protein progressively increases from fresh siliques to seeds concomitant with lower proportions of the shorter TFIIIA-C protein (at protein level) thus leading to 5S rRNA accumulation in the seed. {ECO:0000269|PubMed:22353599}.
UniprotTISSUE SPECIFICITY: Expressed in seedlings, flowers, siliques and seeds. {ECO:0000269|PubMed:22353599}.
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G292900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006576122.10.0transcription factor IIIA
SwissprotQ84MZ41e-138TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A0R0L3F40.0A0A0R0L3F4_SOYBN; Uncharacterized protein
STRINGGLYMA02G46270.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30693370
Representative plantOGRP29811627
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-101transcription factor IIIA