PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G237500.1.p
Common NameGLYMA_02G237500, LOC100786265
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 408aa    MW: 46060.2 Da    PI: 9.806
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G237500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.27.1e-19140228197
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f+k +++s+v +  +l lp kf+eeh  +k+   +++lede+g ++e  +   +++ +  l++GW+ F+ +++L++gD +vF+l++ s+f
  Glyma.02G237500.1.p 140 FIKSMVRSHVYSCFWLGLPSKFCEEHL-PKTL-HDMVLEDENGSEYEAVY--IGNRAG--LSGGWRAFALDHKLDDGDALVFELIEASRF 223
                          89************************4.4555.49***************..555544..*************************99999 PP

                          ..EEEEE CS
                   B3  91 elvvkvf 97 
                            ++ ++
  Glyma.02G237500.1.p 224 --KIYIV 228
                          ..55555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-21133229IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.33E-22135229IPR015300DNA-binding pseudobarrel domain
CDDcd100172.01E-27138229No hitNo description
PfamPF023623.2E-17140228IPR003340B3 DNA binding domain
SMARTSM010197.2E-23140231IPR003340B3 DNA binding domain
PROSITE profilePS5086312.788140231IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MAKGCSNNTY EEARKQRLEE NKKRFEDLGI SRISKNLTEI ASSAKKKLRH VPKQKTKKTN  60
VEVEPRRSSR VRNPVRSYRE DVNIDLPPLR KRSRSSSSSW GSYIARPLDE IKEATKEERL  120
CALEAAEAIQ INLNSSNPSF IKSMVRSHVY SCFWLGLPSK FCEEHLPKTL HDMVLEDENG  180
SEYEAVYIGN RAGLSGGWRA FALDHKLDDG DALVFELIEA SRFKIYIVRA FPDSVEEKGN  240
NILEEEGNVR ATKAPKAACN LESECKTKKP KQAAVYETKE SESSQEYLLD SSIDNEVKPQ  300
GVNPTNKETK FSQKNTPKKS KYPATADSKG KVQIKTEKPK ASIKLSNNTR KSKEGINEIG  360
GSDKLEKNEF VQDADSKLEK VELVEEARKC VTKKLEKTSS KFFRKKA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G237500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150363e-71AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014624887.10.0putative B3 domain-containing protein At5g58280 isoform X1
SwissprotQ9FHB21e-67Y5828_ARATH; Putative B3 domain-containing protein At5g58280
TrEMBLK7KAC90.0K7KAC9_SOYBN; Uncharacterized protein
STRINGGLYMA02G40400.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF124332328
Representative plantOGRP9951658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.12e-53B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]