PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G222300.1.p
Common NameGLYMA_02G222300, NAC012
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 590aa    MW: 65601.6 Da    PI: 4.654
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G222300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.22.7e-52211471127
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          lp GfrF+Ptdeel+++yL+ k++g+  ++  vi+e+d++k+ePwdLp  + v++++ ew+fF+++d+ky++g+r nrat++gyWkatgk
  Glyma.02G222300.1.p  21 LPLGFRFRPTDEELIDYYLRSKINGNGDDV-WVIREIDVCKWEPWDLPdlSVVRNKDPEWFFFCPQDRKYPNGHRLNRATSHGYWKATGK 109
                          699************************999.89**************96447777888******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                          d++++s +++l+g+kktLvfy+grapkg++t+Wvmheyr
  Glyma.02G222300.1.p 110 DRRIKS-GSTLIGMKKTLVFYTGRAPKGKRTNWVMHEYR 147
                          ******.99*****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-6113171IPR003441NAC domain
PROSITE profilePS5100556.2921171IPR003441NAC domain
PfamPF023651.4E-2722147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0071470Biological Processcellular response to osmotic stress
GO:1900426Biological Processpositive regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MGAVVECYPQ PRTAVLSLNT LPLGFRFRPT DEELIDYYLR SKINGNGDDV WVIREIDVCK  60
WEPWDLPDLS VVRNKDPEWF FFCPQDRKYP NGHRLNRATS HGYWKATGKD RRIKSGSTLI  120
GMKKTLVFYT GRAPKGKRTN WVMHEYRPTL KELDGTNPGQ NPYVLCRLFK KQDESLEASN  180
GDDVDRTAST PMTANYSPDE IQSDSALVPA SSSQVTEDDK PLPVISENSE EAISNIITPG  240
EIHSDGCNAP DAQDQIVEPV AEEDQPLNVD IFYDPTNLPL DDKLFSPVHA HFPTDFYYQA  300
NNQSELQYGT NENISEFFDS VVNWDAFSHD TSSLDLSSSF LINNTDNGSG SDSDVEMTNM  360
PHLQALHNYP KEAVEQKSNV GLFQNNFQMA LSNDSTMGQV HNMVNYCEQP RNFDAFVSAD  420
TGIRIRTRPG RNEQPNMDTM VQSQGIAPRR IRLGVVRRPL GSQDGSCACA PEDHNSKTII  480
TAEKKASESE NHAADGSSTV SDMSSTVTDD VDEPEEASPE STDLRNISEK HVATAESVAG  540
SKVLLVNRRV HYTSKVSSNR ATWSNVLAVS AAVLVSAILL VNIWAYVRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-46131759169NO APICAL MERISTEM PROTEIN
1ut4_B5e-46131759169NO APICAL MERISTEM PROTEIN
1ut7_A5e-46131759169NO APICAL MERISTEM PROTEIN
1ut7_B5e-46131759169NO APICAL MERISTEM PROTEIN
3swm_A6e-461317512172NAC domain-containing protein 19
3swm_B6e-461317512172NAC domain-containing protein 19
3swm_C6e-461317512172NAC domain-containing protein 19
3swm_D6e-461317512172NAC domain-containing protein 19
3swp_A6e-461317512172NAC domain-containing protein 19
3swp_B6e-461317512172NAC domain-containing protein 19
3swp_C6e-461317512172NAC domain-containing protein 19
3swp_D6e-461317512172NAC domain-containing protein 19
4dul_A5e-46131759169NAC domain-containing protein 19
4dul_B5e-46131759169NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.244380.0cotyledon| flower| leaf| meristem| seed coat| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00108PBMTransfer from AT4G35580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G222300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5690450.0JX569045.1 Glycine max NAC transcription factor (NAC012) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001276287.10.0NAC domain protein
RefseqXP_028213974.10.0protein NTM1-like 9
TrEMBLA0A445LSL90.0A0A445LSL9_GLYSO; Protein NTM1-like 9 isoform A
TrEMBLI1JH850.0I1JH85_SOYBN; NAC transcription factor
STRINGGLYMA02G38710.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55513353
Representative plantOGRP9409612
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.22e-98NAC transcription factor-like 9