PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.02G183100.1.p

Common Name

GLYMA_02G183100, LOC100786272

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

C2H2

Protein Properties

Length: 282aa MW: 30841 Da PI: 8.4156

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.02G183100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00021	216	238	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg Fs+ +L+ H ++ H Glyma.02G183100.1.p 216 QCPQCGAKFSSVTTLVDHVQKvH 238 7******************9988 PP
2	zf-C2H2	15.9	3.6e-05	253	275	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp+C++ F+++ L+ H + H Glyma.02G183100.1.p 253 VCPKCSRGFRDPVALVEHVEKdH 275 7*****************99888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF118310	8.24E-12	4	59	No hit	No description
PROSITE profile	PS51039	7.716	10	56	IPR000058	Zinc finger, AN1-type
Gene3D	G3DSA:4.10.1110.10	3.9E-10	10	53	IPR000058	Zinc finger, AN1-type
Pfam	PF01428	6.5E-13	13	51	IPR000058	Zinc finger, AN1-type
SMART	SM00154	0.013	13	52	IPR000058	Zinc finger, AN1-type
Gene3D	G3DSA:4.10.1110.10	1.8E-10	90	148	IPR000058	Zinc finger, AN1-type
SuperFamily	SSF118310	5.89E-9	93	144	No hit	No description
PROSITE profile	PS51039	7.803	98	147	IPR000058	Zinc finger, AN1-type
Pfam	PF01428	4.0E-8	101	140	IPR000058	Zinc finger, AN1-type
SMART	SM00154	0.19	101	142	IPR000058	Zinc finger, AN1-type
SMART	SM00355	0.0064	215	238	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.494	215	243	IPR007087	Zinc finger, C2H2
Pfam	PF13894	2.2E-4	216	238	No hit	No description
PROSITE pattern	PS00028	0	217	238	IPR007087	Zinc finger, C2H2
SMART	SM00355	6.5	252	275	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.663	252	280	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	254	275	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MGTPEFPDLG KHCAVSDCKL IDFLPFTCDR CDQVYCLEHR SYIKHLCTKA DKQDVTVVIC 60 PLCAKGVRLV PDQDPNITWE NHVNTECDPS NYEKVTKKKK CPVPGCREIL VFSNTIKCRD 120 CTVEHCLKHR FGPDHKCPGP KNVESSFSFM NLLNGSKKQE SKPKSSATTS SKWSTSFLNA 180 ASNIRASAEA GVSKLSAWQT ARGGVGQSHS SGQVEQCPQC GAKFSSVTTL VDHVQKVHER 240 SGNRSGAKVT IDVCPKCSRG FRDPVALVEH VEKDHGGSSR S*

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in environmental stress response. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00306	DAP	Transfer from AT2G41835	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.02G183100.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, dehydration and salt stress. {ECO:0000269\|PubMed:17033811}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT098410	0.0	BT098410.1 Soybean clone JCVI-FLGm-16J1 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003519070.1	0.0	zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
Refseq	XP_025981677.1	0.0	zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
Refseq	XP_028209812.1	0.0	zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like
Refseq	XP_028209817.1	0.0	zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like
Swissprot	Q0D5B9	1e-126	SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBL	A0A0B2NX24	0.0	A0A0B2NX24_GLYSO; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBL	I1JG86	0.0	I1JG86_SOYBN; Uncharacterized protein
STRING	GLYMA02G31550.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5864	33	51
Representative plant	OGRP1909	15	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41835.1	1e-122	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Glyma.02G183100.1.p
Entrez Gene	100786272

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]