PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G200800.1.p
Common NameGLYMA_01G200800, LOC100779121
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARR-B
Protein Properties Length: 559aa    MW: 62434.4 Da    PI: 6.4695
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G200800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.37e-28313367156
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                          k +++WtpeLH++Fv+aveqL G+++A+P++ile+mkv+gLt+++v+SHLQkYR++
  Glyma.01G200800.1.p 313 KMKVDWTPELHKKFVKAVEQL-GIDQAIPSRILEIMKVEGLTRHNVASHLQKYRIH 367
                          5689*****************.********************************86 PP
2Response_reg27.41.7e-10201261109
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTT.SEHHHHHHHHHHHTTTSEEEEEESTTTHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempg.mdGlellkeireeepklpiivvtahgeeedal 87 
                          vl+ + + + +  +r+ le  +y +v ++ d  eal  l  +   +++ ++ ++ +  + G+++l++    +++lp i+ +  +  +++ 
  Glyma.01G200800.1.p  20 VLLLEGDSSSAAEIREQLEAVDY-NVSTFYDENEALSALSSSPegFHVAIVEVSTSCsLGGFKFLEN----SKDLPTIMTSKDQCLNTMM 104
                          67777788888999*********.***************888888*******999998899998864....45899999999999***** PP

                          HHHHTTESEEEESS--HHHHHH CS
         Response_reg  88 ealkaGakdflsKpfdpeelvk 109
                          +++ +Ga +flsKp ++++l +
  Glyma.01G200800.1.p 105 KCIALGAVEFLSKPLSEDKLKN 126
                          ******************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521729.25E-1516134IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23004.1E-1616139No hitNo description
PROSITE profilePS5011020.25819132IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.4E-720126IPR001789Signal transduction response regulator, receiver domain
CDDcd001567.20E-921131No hitNo description
PROSITE profilePS5129415.958310369IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.3E-27311370IPR009057Homeodomain-like
SuperFamilySSF466893.85E-18312369IPR009057Homeodomain-like
TIGRFAMsTIGR015573.3E-25313368IPR006447Myb domain, plants
PfamPF002491.4E-7316365IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MVCTANDLQE WKDFPKGLRV LLLEGDSSSA AEIREQLEAV DYNVSTFYDE NEALSALSSS  60
PEGFHVAIVE VSTSCSLGGF KFLENSKDLP TIMTSKDQCL NTMMKCIALG AVEFLSKPLS  120
EDKLKNIWQH VVHKAFNAGA NVLSESLKPV KESVESMLQL QTENGQDKSR ISIDLENVSR  180
FSDIDHEQSA VCDKYPAPST PQLKQGTRLL DDGDCHDQTN CSTEKESVEH DGECKSVETL  240
CENLNAESSP QPREPDKTLI KEEEDFANGS RGESAVSLSP NNKKFLSNAD GNTSPNRTGV  300
LNDSCEIKAN RKKMKVDWTP ELHKKFVKAV EQLGIDQAIP SRILEIMKVE GLTRHNVASH  360
LQKYRIHKRQ SAPREEDRKW HNQRDAMQRN YYMQRPIMAY PPYHSNHTLS PAPIYPMWGQ  420
PGSQTAGVQI WGHPGYHIWH PTESCHWKPY QGVHVDAWGC PLLPAPQAPC FPYNQNIPGL  480
HNPKAVDYRF GMPQSSFEHH PAEEVVDKVV KEAISKPWLP LPLGLKPPSM DSVLAELSKQ  540
GISGIPLGNK RSSTPKLR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A1e-16318367655Transcription factor LUX
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.319010.0flower| root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G200800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-139AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006573692.10.0two-component response regulator-like APRR2 isoform X1
RefseqXP_006573693.10.0two-component response regulator-like APRR2 isoform X1
RefseqXP_025984645.10.0two-component response regulator-like APRR2 isoform X1
SwissprotQ6LA431e-139APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLK7K4U90.0K7K4U9_SOYBN; Uncharacterized protein
STRINGGLYMA01G40900.40.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35663465
Representative plantOGRP9166813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-136ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]