PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.01G121000.1.p | ||||||||
Common Name | GLYMA_01G121000, LOC100791013 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | Trihelix | ||||||||
Protein Properties | Length: 273aa MW: 32750.9 Da PI: 8.1135 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 77.8 | 1.6e-24 | 37 | 119 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ qe+++ + +r+e+++++ ++k++k+lWe +s++m+e+g++rs++qCk+kw+nl +ryk +++e++ +++++p++++ + Glyma.01G121000.1.p 37 QWSIQETKEFLVIREELDQTFMETKRNKQLWEVISNRMKEKGYHRSAEQCKCKWKNLVTRYKGFETMEQEA---TRQQFPFYNEFN 119 7********************************************************************96...45679**99865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd12203 | 3.58E-21 | 36 | 99 | No hit | No description |
Pfam | PF13837 | 6.2E-20 | 37 | 121 | No hit | No description |
PROSITE profile | PS50090 | 7.549 | 38 | 94 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0016592 | Cellular Component | mediator complex |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MEGTHHLHHH HQGHQQQQQQ RVLPQNMNVD VTDRFPQWSI QETKEFLVIR EELDQTFMET 60 KRNKQLWEVI SNRMKEKGYH RSAEQCKCKW KNLVTRYKGF ETMEQEATRQ QFPFYNEFNA 120 IFTARMQRML WAEAEGGSKK NKATTQLSSD ENEESTEAGS GRKKKKAKIG SRGGDNCSGS 180 FNSLKEILEE FMRQQMQIDT QWMEAFEARE NERRLKEMEW RQAMEVLENE RIMMEERWRE 240 REEQRRIREE ARAEKRDALI TALLNKLERQ GM* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269|PubMed:15310827}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.01G121000.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269|PubMed:15310827}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 1e-130 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003516961.1 | 0.0 | trihelix transcription factor GT-3b | ||||
Refseq | XP_028236793.1 | 0.0 | trihelix transcription factor GT-3b-like | ||||
Swissprot | O80450 | 2e-68 | TGT3B_ARATH; Trihelix transcription factor GT-3b | ||||
TrEMBL | A0A445M1Z4 | 0.0 | A0A445M1Z4_GLYSO; Trihelix transcription factor GT-3b | ||||
TrEMBL | I1J7E1 | 0.0 | I1J7E1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA01G29760.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1781 | 33 | 85 | Representative plant | OGRP2262 | 15 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01380.1 | 2e-65 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.01G121000.1.p |
Entrez Gene | 100791013 |
Publications ? help Back to Top | |||
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