PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G101800.1.p
Common NameGLYMA_01G101800, LOC100801427
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 314aa    MW: 34884.9 Da    PI: 8.0655
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G101800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.000235476123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y+C+ C + F++   L  H+++H
  Glyma.01G101800.1.p 54 YSCSFCRREFRSAQALGGHMNVH 76
                         99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.5E-65180No hitNo description
PROSITE profilePS5015711.2195481IPR007087Zinc finger, C2H2
SMARTSM003550.00985476IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805676IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MEQGQCWTKR KKYSLSSSTG SPTNPSYGDS WEEQAFAEDA ANSLGGCIWP PRSYSCSFCR  60
REFRSAQALG GHMNVHRRDR ARLKQQPTSP HNEILCHDLE TQLHKPVQSP FASLGGYLYP  120
SPLCGLACKK TNPNCDPDFV ASPSSSPSPS KALLAPSANI GTFREETMIP LYDSSILHKI  180
SPASNSSESW PNSAEDHRLY SCKFHPQADT TKPSKGIMDF RCRGNKGNND DIDGDINFNS  240
VVYRTHPSLQ FESTKEPDHI SCKKRKTDAS STLFSPKSSS VDRHQVQPKM FEFSPSSMEE  300
LDLELRLGNR SKI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-124976229superman protein
2l1o_A2e-124976229Transcriptional regulator SUPERMAN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.198930.0flower| hypocotyl
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G101800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003516295.10.0zinc finger protein 10
TrEMBLI1J6Y70.0I1J6Y7_SOYBN; Uncharacterized protein
STRINGGLYMA01G24820.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17763078
Representative plantOGRP5761581
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.12e-26zinc-finger protein 10