PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_Sca107594G01

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 68aa MW: 8033.93 Da PI: 8.9472

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_Sca107594G01	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	78.3	9.5e-25	2	64	1	63
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkr++rkq+NRe+ArrsR+RK+ae+eeL+ +v++L +eN +L+ el++l++e++kl se+ Gh_Sca107594G01 2 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVENLANENCTLRGELQKLSDECEKLSSEN 64 89***********************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	6.7E-19	1	61	No hit	No description
SMART	SM00338	5.1E-19	2	66	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.8E-22	2	64	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	13.036	4	67	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.31E-13	5	61	No hit	No description
CDD	cd14702	1.72E-10	7	57	No hit	No description
PROSITE pattern	PS00036	0	9	24	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 68 aa Download sequence Send to blast
DERELKRQKR KQSNRESARR SRLRKQAECE ELQARVENLA NENCTLRGEL QKLSDECEKL 60 SSENSSIK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	18	24	RRSRLRK
2	18	25	RRSRLRKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.2271	4e-33	ovule

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Found in both light and dark grown leaves.

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269\|PubMed:1373374, ECO:0000269\|PubMed:22718771}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016713043.1	7e-34	PREDICTED: G-box-binding factor 1-like
Refseq	XP_017634782.1	7e-34	PREDICTED: G-box-binding factor 1-like isoform X2
Refseq	XP_017985212.1	6e-34	PREDICTED: G-box-binding factor 1 isoform X2
Swissprot	P42774	1e-25	GBF1_ARATH; G-box-binding factor 1
TrEMBL	A0A0D2SNM3	2e-38	A0A0D2SNM3_GOSRA; Uncharacterized protein
STRING	Gorai.007G205700.1	3e-33	(Gossypium raimondii)
STRING	Gorai.008G068900.1	3e-33	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM26839	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36730.2	3e-28	G-box binding factor 1

Publications ? help Back to Top
Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development. Mol Plant, 2013. 6(6): p. 1758-68 [PMID:24157607] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Karumuri S,Bandopadhyay R In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana. Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9 [PMID:25630103] Smykowski A,Zimmermann P,Zentgraf U CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis. Plant Physiol., 2016. 170(2): p. 1164-7 [PMID:26826725] Smykowski A,Fischer SM,Zentgraf U Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1. Plants (Basel), 2015. 4(3): p. 691-709 [PMID:27135347] Giri MK, et al. GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana. Plant J., 2017. 91(5): p. 802-815 [PMID:28622438]