PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_Sca066928G01

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 141aa MW: 16022.6 Da PI: 10.0858

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_Sca066928G01	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.7	0.0016	68	90	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk k + ++H +++ Gh_Sca066928G01 68 FMCRKCGKFLAVKGDWRTHEKNC 90 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.06E-5	53	88	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 141 aa Download sequence Send to blast
MHMWGHGSQY RKGPESLKGT QPRAMLGIPC YCCAEGCKNN IEHPRAKPLK DFRTLQTHYK 60 RKHGLKPFMC RKCGKFLAVK GDWRTHEKNC GKRWLCVCGS DFKHKRSLKD HIKAFGSGHG 120 PFPPSFDGVE VLEDTASSLH V

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.23065	0.0	boll

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Developing ovules and young seeds. {ECO:0000269\|PubMed:11782451}.
Uniprot	TISSUE SPECIFICITY: Restricted to the endothelium, the innermost cell layer of the seed coat and detected to a lesser extent in the other cell layers of the testa. {ECO:0000269\|PubMed:11782451}.

Functional Description ? help Back to Top
Source	Description
UniProt	May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269\|PubMed:11782451, ECO:0000269\|PubMed:21477081}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX580084	1e-113	JX580084.1 Gossypium hirsutum clone NBRI_GE12446 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017645159.1	1e-102	PREDICTED: protein TRANSPARENT TESTA 1-like
Swissprot	Q8VWG3	1e-81	TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBL	A0A0B0MYQ3	1e-101	A0A0B0MYQ3_GOSAR; Protein TRANSPARENT TESTA 1-like protein
TrEMBL	A0A1U8PVB2	1e-101	A0A1U8PVB2_GOSHI; protein TRANSPARENT TESTA 1-like
STRING	Gorai.010G039600.1	1e-101	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM239	28	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34790.1	5e-84	C2H2 family protein

Publications ? help Back to Top
Lian J, et al. Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus. Plant Sci., 2017. 254: p. 32-47 [PMID:27964783]