PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gh_D12G2131 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | RAV | ||||||||
Protein Properties | Length: 257aa MW: 29605.4 Da PI: 8.8006 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 28.5 | 3.9e-09 | 35 | 81 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +kGV + +++W A++ n ++ ++lg++ t+eeAa a+++a++kl + Gh_D12G2131 35 FKGVLPLE-SHKWGARVSF---N--YRAYWLGTYYTEEEAAIAYDRAALKLLK 81 66664333.689**99544...2..5************************975 PP | |||||||
2 | B3 | 54.1 | 2.9e-17 | 152 | 246 | 1 | 83 |
EEEE-..-HHHHTT-EE--HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f k+lt+ dv++ +++ +p+++a ++ +g + s+++t++d+ r W+++++y+++ + ++++kGW++Fv n L+ gD+v+F+ Gh_D12G2131 152 FHKELTQIDVSNADLFQIPNEYALQFlppvgnnssgigvqMG--RDSIDITFYDKYYRPWNFRYSYWGRIKVFLFAKGWRDFVIMNSLNPGDTVIFY 246 89*********************999***9887777765422..2899************************************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.72E-15 | 33 | 91 | No hit | No description |
PROSITE profile | PS51032 | 14.249 | 34 | 89 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-9 | 34 | 95 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.9E-12 | 34 | 89 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.03E-13 | 34 | 91 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.7E-4 | 42 | 80 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 9.5E-19 | 149 | 246 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.22E-18 | 150 | 246 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.53E-17 | 151 | 246 | No hit | No description |
Pfam | PF02362 | 5.2E-14 | 152 | 247 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2E-6 | 152 | 256 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.293 | 152 | 257 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 257 aa Download sequence Send to blast |
MEGSPNPNNK TTPYQKISGR CSGTDTGSRR LSTRFKGVLP LESHKWGARV SFNYRAYWLG 60 TYYTEEEAAI AYDRAALKLL KTDAPLNLPY NIYTPQEKSF QSWYSDDEIL NMIKDKTYSS 120 HFTAFLVHQS LAKKTLPGSL TNAKGLSYEM LFHKELTQID VSNADLFQIP NEYALQFLPP 180 VGNNSSGIGV QMGRDSIDIT FYDKYYRPWN FRYSYWGRIK VFLFAKGWRD FVIMNSLNPG 240 DTVIFYGCYH VDEEGQK |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017635830.1 | 0.0 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like | ||||
TrEMBL | A0A1U8MTA4 | 0.0 | A0A1U8MTA4_GOSHI; AP2/ERF and B3 domain-containing transcription factor At1g51120-like | ||||
STRING | Gorai.008G232300.1 | 1e-153 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM20740 | 4 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G51120.1 | 3e-47 | RAV family protein |