PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G2032
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family BBR-BPC
Protein Properties Length: 234aa    MW: 25459.3 Da    PI: 10.5208
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G2032genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind244.47.7e-7542234109301
    GAGA_bind 109 dslqqlsepqledsave..lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslD 204
                  + +  ++ep l  s++   +  +e  +++ + ++++++ ++k++ k++++  pk+   k++ kk++ + kk k +s  +++k+ekk+ +++l+g ++D
  Gh_D12G2032  42 QRTGIHHEPGLVVSPIRtiAATTESGNNNDLGTKTTKVGKQKSSVKGSNQIAPKVLGPKQPMKKPSLP-KKGKGPSI-PETKREKKNPNINLDGTKFD 137
                  5555555555555555533455666677788888999999999999999**********999988777.55566665.699***************** PP

    GAGA_bind 205 estlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                   s++P P+CsCtG+ r+CYkWG+ GWqS+CCt++iS  PLP+s++r+gaR+agrKmS+ga+ klL +LaaeGydls+pvDLkdhWA+HGtnkfvti+
  Gh_D12G2032 138 FSGVPSPICSCTGVARVCYKWGASGWQSSCCTINISECPLPMSPTRPGARVAGRKMSNGAYFKLLLRLAAEGYDLSHPVDLKDHWARHGTNKFVTIK 234
                  ************************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012268.6E-781234IPR010409GAGA-binding transcriptional activator
PfamPF062174.9E-6677234IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MKMRSYSDKN VMPETEIGST GSPFSWLYHY NPTSKPGFSS LQRTGIHHEP GLVVSPIRTI  60
AATTESGNNN DLGTKTTKVG KQKSSVKGSN QIAPKVLGPK QPMKKPSLPK KGKGPSIPET  120
KREKKNPNIN LDGTKFDFSG VPSPICSCTG VARVCYKWGA SGWQSSCCTI NISECPLPMS  180
PTRPGARVAG RKMSNGAYFK LLLRLAAEGY DLSHPVDLKD HWARHGTNKF VTIK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in anthers, in pollen grains, in young rosette, in leaf vasculature, in the lateral and primary roots, in embryo sac, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012439264.11e-174PREDICTED: protein BASIC PENTACYSTEINE7-like
RefseqXP_012439265.11e-174PREDICTED: protein BASIC PENTACYSTEINE7-like
RefseqXP_012439266.11e-174PREDICTED: protein BASIC PENTACYSTEINE7-like
RefseqXP_016736554.11e-174PREDICTED: protein BASIC PENTACYSTEINE7-like
RefseqXP_016736555.11e-174PREDICTED: protein BASIC PENTACYSTEINE7-like
RefseqXP_016736556.11e-174PREDICTED: protein BASIC PENTACYSTEINE7-like
SwissprotO822862e-72BPC7_ARATH; Protein BASIC PENTACYSTEINE7
TrEMBLA0A0D2TAR11e-172A0A0D2TAR1_GOSRA; Uncharacterized protein
TrEMBLA0A1U8NC141e-172A0A1U8NC14_GOSHI; protein BASIC PENTACYSTEINE7-like
STRINGGorai.008G222300.11e-173(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136742127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35550.43e-68basic pentacysteine 7