PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G1254
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 596aa    MW: 67422.9 Da    PI: 5.4575
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G1254genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2761.2e-842125821374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl....fsevsPilkf 93 
                  lv+lLl++Ae v  +++e+a++lL++ + +as++++p+qR++ yf+eAL++r+ + ++  ++k  ++  ++    +e+   ++l     +e  P++++
  Gh_D12G1254 212 LVHLLLTAAEKVGYEQFERANRLLSHCEWIASERANPVQRIVYYFAEALRERIDKgMGRIIAKEPEMIFKT---GIENGLNTNLisvrMHEYVPFFQV 306
                  68*****************************************************5555555555333332...2222222222233599******** PP

         GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                  ++++  qaI e v++++++HiiD+++  G+QW  L+qaL++R+ +    l+iT+vg    + +e++ etg+rL+++A+++++pf+f +++++++ed++
  Gh_D12G1254 307 TQFMGIQAIIENVASASKIHIIDLELRSGVQWTGLMQALSEREiRHVEILKITAVGF---VGNEKIAETGKRLESVAASFKLPFSFIAVYVEDMEDIK 401
                  *******************************************88888*********...78************************************ PP

         GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288
                   e +++ ++E+l+V + l l ++ +++++le+    +++++k+l+P++v+v+e ea+hns+sF++rf+eal +ys++fd+l++ l +e e r+ vE +
  Gh_D12G1254 402 EELFKIGNDESLVVFCPLVLRTMISRPTCLEN----LMRVMKNLNPTIVIVIEIEANHNSPSFVNRFIEALFFYSTFFDCLDTCLEHEGELRAGVESV 495
                  ************************99999999....*************************************************************9 PP

         GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdg.yrveeesgslvlgWkdrpLvsvSaWr 374
                   l + i+n+va+eg+er+ r  +le W++ + ++ ++++ +se+   q +l++++++      ++++  +s++ gWk+ p+ svSaW+
  Gh_D12G1254 496 -LCNGIRNIVAMEGKERVVRSVKLEVWSAFFARFRMTELGFSESSLYQGSLVIKQFPsAASyCTLDKCGKSVIVGWKGTPVQSVSAWK 582
                  .999*****************************************************6555346777888999**************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.542186560IPR005202Transcription factor GRAS
PfamPF035144.0E-82212582IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MDNGLFPFSS PFDFNGIQGN YNLPDFEKDG TVIKGKHDPL LGFQEIGDDP DNDPVFPNHG  60
LYQNVTKMSE NQEQQRGRAA TKSAFSDEFS FSSVFSGNMA FQEFSRPENM KPIKDCNMQS  120
SCRLSSLELL TNYGNGFKKL RFSKYVGSDG EDGTDERGGG QKKLSAEEIM RVTGARYIQL  180
SDMRYDDFSM IMHPFGHALS GLSDDDTKDV ELVHLLLTAA EKVGYEQFER ANRLLSHCEW  240
IASERANPVQ RIVYYFAEAL RERIDKGMGR IIAKEPEMIF KTGIENGLNT NLISVRMHEY  300
VPFFQVTQFM GIQAIIENVA SASKIHIIDL ELRSGVQWTG LMQALSEREI RHVEILKITA  360
VGFVGNEKIA ETGKRLESVA ASFKLPFSFI AVYVEDMEDI KEELFKIGND ESLVVFCPLV  420
LRTMISRPTC LENLMRVMKN LNPTIVIVIE IEANHNSPSF VNRFIEALFF YSTFFDCLDT  480
CLEHEGELRA GVESVLCNGI RNIVAMEGKE RVVRSVKLEV WSAFFARFRM TELGFSESSL  540
YQGSLVIKQF PSAASYCTLD KCGKSVIVGW KGTPVQSVSA WKFSRDRGRV FGNYRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-3422058127378Protein SCARECROW
5b3h_A2e-3422058126377Protein SCARECROW
5b3h_D2e-3422058126377Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012437965.10.0PREDICTED: DELLA protein RGL1-like
TrEMBLA0A2P5RI640.0A0A2P5RI64_GOSBA; Uncharacterized protein
STRINGGorai.008G139000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16533913
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.12e-51RGA-like 1