PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D12G1254 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | GRAS | ||||||||
Protein Properties | Length: 596aa MW: 67422.9 Da PI: 5.4575 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 276 | 1.2e-84 | 212 | 582 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl....fsevsPilkf 93 lv+lLl++Ae v +++e+a++lL++ + +as++++p+qR++ yf+eAL++r+ + ++ ++k ++ ++ +e+ ++l +e P++++ Gh_D12G1254 212 LVHLLLTAAEKVGYEQFERANRLLSHCEWIASERANPVQRIVYYFAEALRERIDKgMGRIIAKEPEMIFKT---GIENGLNTNLisvrMHEYVPFFQV 306 68*****************************************************5555555555333332...2222222222233599******** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190 ++++ qaI e v++++++HiiD+++ G+QW L+qaL++R+ + l+iT+vg + +e++ etg+rL+++A+++++pf+f +++++++ed++ Gh_D12G1254 307 TQFMGIQAIIENVASASKIHIIDLELRSGVQWTGLMQALSEREiRHVEILKITAVGF---VGNEKIAETGKRLESVAASFKLPFSFIAVYVEDMEDIK 401 *******************************************88888*********...78************************************ PP GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288 e +++ ++E+l+V + l l ++ +++++le+ +++++k+l+P++v+v+e ea+hns+sF++rf+eal +ys++fd+l++ l +e e r+ vE + Gh_D12G1254 402 EELFKIGNDESLVVFCPLVLRTMISRPTCLEN----LMRVMKNLNPTIVIVIEIEANHNSPSFVNRFIEALFFYSTFFDCLDTCLEHEGELRAGVESV 495 ************************99999999....*************************************************************9 PP GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdg.yrveeesgslvlgWkdrpLvsvSaWr 374 l + i+n+va+eg+er+ r +le W++ + ++ ++++ +se+ q +l++++++ ++++ +s++ gWk+ p+ svSaW+ Gh_D12G1254 496 -LCNGIRNIVAMEGKERVVRSVKLEVWSAFFARFRMTELGFSESSLYQGSLVIKQFPsAASyCTLDKCGKSVIVGWKGTPVQSVSAWK 582 .999*****************************************************6555346777888999**************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 39.542 | 186 | 560 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.0E-82 | 212 | 582 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 596 aa Download sequence Send to blast |
MDNGLFPFSS PFDFNGIQGN YNLPDFEKDG TVIKGKHDPL LGFQEIGDDP DNDPVFPNHG 60 LYQNVTKMSE NQEQQRGRAA TKSAFSDEFS FSSVFSGNMA FQEFSRPENM KPIKDCNMQS 120 SCRLSSLELL TNYGNGFKKL RFSKYVGSDG EDGTDERGGG QKKLSAEEIM RVTGARYIQL 180 SDMRYDDFSM IMHPFGHALS GLSDDDTKDV ELVHLLLTAA EKVGYEQFER ANRLLSHCEW 240 IASERANPVQ RIVYYFAEAL RERIDKGMGR IIAKEPEMIF KTGIENGLNT NLISVRMHEY 300 VPFFQVTQFM GIQAIIENVA SASKIHIIDL ELRSGVQWTG LMQALSEREI RHVEILKITA 360 VGFVGNEKIA ETGKRLESVA ASFKLPFSFI AVYVEDMEDI KEELFKIGND ESLVVFCPLV 420 LRTMISRPTC LENLMRVMKN LNPTIVIVIE IEANHNSPSF VNRFIEALFF YSTFFDCLDT 480 CLEHEGELRA GVESVLCNGI RNIVAMEGKE RVVRSVKLEV WSAFFARFRM TELGFSESSL 540 YQGSLVIKQF PSAASYCTLD KCGKSVIVGW KGTPVQSVSA WKFSRDRGRV FGNYRF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-34 | 220 | 581 | 27 | 378 | Protein SCARECROW |
5b3h_A | 2e-34 | 220 | 581 | 26 | 377 | Protein SCARECROW |
5b3h_D | 2e-34 | 220 | 581 | 26 | 377 | Protein SCARECROW |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012437965.1 | 0.0 | PREDICTED: DELLA protein RGL1-like | ||||
TrEMBL | A0A2P5RI64 | 0.0 | A0A2P5RI64_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.008G139000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16533 | 9 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 2e-51 | RGA-like 1 |