PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G1169
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 411aa    MW: 46815.3 Da    PI: 6.9814
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G1169genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.34.3e-51431711128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                  +ppGfrFhPt+eel+++yL+kkv+ +k++l +vi+evd++k+ePwd+++++k     +++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk ++s 
  Gh_D12G1169  43 VPPGFRFHPTEEELLQYYLRKKVSYEKIDL-DVIREVDLNKLEPWDIQERCKIgttPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIYS- 138
                  69****************************.9***************964444122455**************************************. PP

          NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                  + + +g++ktLvfykgrap+g+k+ W+mheyrl
  Gh_D12G1169 139 NCRRIGMRKTLVFYKGRAPHGQKSYWIMHEYRL 171
                  8889***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.59E-5738201IPR003441NAC domain
PROSITE profilePS5100555.49843201IPR003441NAC domain
PfamPF023655.6E-2744171IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MQSSFGIYHH LLFLSRYSST YIVSIFVKMP ENMNISVNGQ SQVPPGFRFH PTEEELLQYY  60
LRKKVSYEKI DLDVIREVDL NKLEPWDIQE RCKIGTTPQN DWYFFSHKDK KYPTGTRTNR  120
ATAAGFWKAT GRDKVIYSNC RRIGMRKTLV FYKGRAPHGQ KSYWIMHEYR LDDNIVETNV  180
SNGLMEGTQE EGWVVCRIFK KKNHHKTLEN PISTSLSEKT RNLHMFNTCS EGALEHILEY  240
MGRSCKEDNE ANNNNTRFVM SMELAINNNG YYDSFTKLPS LDSPNSAGSY QPIMTENEGS  300
IVNSVSGGDF NSVYNNDSGL TNWAALDRLV ASHLNGQTET SRQLACFNDQ QMAYCNNTNS  360
TDHQDLELPA VRSTSPPPSS SIDIWTSFTT RSSSLSSSVI DPLCHVVNAS V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-484020314167NO APICAL MERISTEM PROTEIN
1ut4_B1e-484020314167NO APICAL MERISTEM PROTEIN
1ut7_A1e-484020314167NO APICAL MERISTEM PROTEIN
1ut7_B1e-484020314167NO APICAL MERISTEM PROTEIN
3swm_A1e-484020317170NAC domain-containing protein 19
3swm_B1e-484020317170NAC domain-containing protein 19
3swm_C1e-484020317170NAC domain-containing protein 19
3swm_D1e-484020317170NAC domain-containing protein 19
3swp_A1e-484020317170NAC domain-containing protein 19
3swp_B1e-484020317170NAC domain-containing protein 19
3swp_C1e-484020317170NAC domain-containing protein 19
3swp_D1e-484020317170NAC domain-containing protein 19
4dul_A1e-484020314167NAC domain-containing protein 19
4dul_B1e-484020314167NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.203960.0boll| ovule| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in various aboveground tissues undergoing thickening of the lignified secondary wall such as anthers, filaments of stamens, the base of carpels, styles, the boundaries between siliques and pedicels, the midrib of leaf veins, and inflorescence stems, specifically in interfascicular fibers (sclerenchyma), cells differentiating into vascular vessels, and xylary fibers (secondary xylem). {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472210.0KC847221.1 Gossypium hirsutum NAC domain protein NAC44 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012437819.10.0PREDICTED: NAC domain-containing protein 43-like
SwissprotQ84WP61e-131NAC43_ARATH; NAC domain-containing protein 43
TrEMBLA0A1U8NCF80.0A0A1U8NCF8_GOSHI; NAC domain-containing protein 43-like
STRINGGorai.008G130300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77828124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46770.11e-121NAC family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Gondolf VM, et al.
    A gene stacking approach leads to engineered plants with highly increased galactan levels in Arabidopsis.
    BMC Plant Biol., 2014. 14: p. 344
    [PMID:25492673]
  3. Jaradat MR,Ruegger M,Bowling A,Butler H,Cutler AJ
    A comprehensive transcriptome analysis of silique development and dehiscence in Arabidopsis and Brassica integrating genotypic, interspecies and developmental comparisons.
    GM Crops Food, 2014. 5(4): p. 302-20
    [PMID:25523176]
  4. Yuan Y,Teng Q,Zhong R,Ye ZH
    TBL3 and TBL31, Two Arabidopsis DUF231 Domain Proteins, are Required for 3-O-Monoacetylation of Xylan.
    Plant Cell Physiol., 2016. 57(1): p. 35-45
    [PMID:26556650]
  5. Yang C, et al.
    Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation.
    Plant Physiol., 2017. 175(1): p. 333-350
    [PMID:28724622]
  6. Pascual MB, et al.
    PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine.
    Plant Biotechnol. J., 2018. 16(5): p. 1094-1104
    [PMID:29055073]
  7. Liu C,Yu H,Li L
    SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana.
    PLoS Genet., 2019. 15(1): p. e1007928
    [PMID:30657769]