PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G0160
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 524aa    MW: 58630.3 Da    PI: 6.0137
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G0160genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.79.4e-5391371128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                  lp G+rF+Ptdeel+++yL++kv+gk+ ++  +i+evd++k+ePwdLp+  +vk+++ ew+fF++ d+ky++g+r nrat++gyWkatgkd++++s +
  Gh_D11G0160   9 LPIGIRFRPTDEELIDFYLRAKVNGKRKDEIGIIREVDVCKCEPWDLPHlsAVKGRDPEWFFFCPLDRKYPNGNRLNRATEAGYWKATGKDRKIKS-G 105
                  699************************999899***************4347788888**************************************.9 PP

          NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                  + l+g+k+tLvfy+grapkg++t+Wvmheyr 
  Gh_D11G0160 106 SCLIGMKRTLVFYTGRAPKGKRTNWVMHEYRT 137
                  9*****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-594160IPR003441NAC domain
PROSITE profilePS5100556.4169160IPR003441NAC domain
PfamPF023651.1E-2610136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MAVISLNSLP IGIRFRPTDE ELIDFYLRAK VNGKRKDEIG IIREVDVCKC EPWDLPHLSA  60
VKGRDPEWFF FCPLDRKYPN GNRLNRATEA GYWKATGKDR KIKSGSCLIG MKRTLVFYTG  120
RAPKGKRTNW VMHEYRTTLD ELDGTKPGQN PFVICRLFKK QDETIEDING DDVDPGASSH  180
TEEVQSEFDG PSVERGAGKV PDETRPVGLC NEAVAPIFDC NNDGFNACEL EEMAPAQVDL  240
LGEALVQFCD PMMEPLDWKL FSPLHSQIEA EGAPWMFDHV GNSFGGVKFE HGTNENDAEF  300
MNSILNNLDD YYSDDSSSRR NSVIETETPK SMAFGTNGGL YCKPDAEPAR VLLGTGTANG  360
GAFYNVLNSN GEPSNHVNTA CNVDTAPTIR IQSRAHRIQP DTENFDTQGI ASRRCKLVHS  420
PRFEAKEHDS KPILPKGVKA MEECISVDSD AARRTMDEPR IFETSKRDVS RLKSKIPVSE  480
AVSYRCLKRF SARRQHKPFS VTMFRVVAVM LILFVALVST LNVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-40816116166NO APICAL MERISTEM PROTEIN
1ut4_B2e-40816116166NO APICAL MERISTEM PROTEIN
1ut7_A2e-40816116166NO APICAL MERISTEM PROTEIN
1ut7_B2e-40816116166NO APICAL MERISTEM PROTEIN
3swm_A2e-40816119169NAC domain-containing protein 19
3swm_B2e-40816119169NAC domain-containing protein 19
3swm_C2e-40816119169NAC domain-containing protein 19
3swm_D2e-40816119169NAC domain-containing protein 19
3swp_A2e-40816119169NAC domain-containing protein 19
3swp_B2e-40816119169NAC domain-containing protein 19
3swp_C2e-40816119169NAC domain-containing protein 19
3swp_D2e-40816119169NAC domain-containing protein 19
4dul_A2e-40816116166NAC domain-containing protein 19
4dul_B2e-40816116166NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.100040.0boll| ovule| root
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472260.0KC847226.1 Gossypium hirsutum NAC domain protein NAC49 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012488635.10.0PREDICTED: NAC domain-containing protein 62-like
TrEMBLA0A2P5SDN80.0A0A2P5SDN8_GOSBA; Uncharacterized protein
STRINGGorai.007G017500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24162873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24590.21e-89TCV-interacting protein