PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D09G1107
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 334aa    MW: 38493.9 Da    PI: 9.1964
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D09G1107genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.92.4e-171766150
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                 k ien+  r ++fskRr gi KK  ELS+LC+ e++ iifs++gk y ++
  Gh_D09G1107 17 KIIENEDDRLISFSKRRFGIYKKICELSTLCGCEILFIIFSPKGKPYSFA 66
                 579******************************************99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.4E-24968IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.212969IPR002100Transcription factor, MADS-box
CDDcd002656.96E-301085No hitNo description
SuperFamilySSF554552.09E-231082IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-161131IPR002100Transcription factor, MADS-box
PfamPF003195.6E-201965IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-163146IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-164667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MASSSKKTRG KQKIEIKIIE NEDDRLISFS KRRFGIYKKI CELSTLCGCE ILFIIFSPKG  60
KPYSFAHPSI EAVTKRFLNP HQPLHETTDA PIETYRKVRI KSLVQDYNEV HDQLDASKEK  120
QKAFSLAQQS RGSESHHWWK TPIYQLNPRE LHEQDKRFAE FINLVSVARD KKIASISSMH  180
AAMDEDVPFV VPPRCGPSLH EILFIIFSPK GKPYSFAHPS IEVVTKCFLN PNQPLHETTN  240
ALVEAYRKPY SFAHPSIEAV TKRFLNPHQP LYETTDALVE AYRKPYSFAH PSTEFLTKRF  300
LNPNQPLHET TDAPVEAYRK ENEKDKSPNT NIQT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016673104.11e-146PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A0D2Q9A11e-177A0A0D2Q9A1_GOSRA; Uncharacterized protein
STRINGGorai.006G132000.11e-177(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.11e-28AGAMOUS-like 57