PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D08G2550 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HRT-like | ||||||||
Protein Properties | Length: 245aa MW: 27247.1 Da PI: 8.8688 | ||||||||
Description | HRT-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HRT-like | 55.3 | 1.1e-17 | 19 | 49 | 1 | 31 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+++dGs C+r Pv gRKRC HKG+Ri Gh_D08G2550 19 ICGVAMDDGSLCRRRPVSGRKRCDLHKGRRI 49 8*****************************7 PP | |||||||
2 | HRT-like | 26.2 | 1.4e-08 | 220 | 244 | 1 | 26 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeH 26 iCG+ +++Gs C+r Pvkg+ RC++H Gh_D08G2550 220 ICGAPTRNGSSCRR-PVKGNGRCWQH 244 8***********86.9********** PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MKSQPYKEDY PEIEHCSPIC GVAMDDGSLC RRRPVSGRKR CDLHKGRRIY SSNSEITRYQ 60 TTPYAVFNSY SDEASDFYEN RTGMAISIYN RNNCSTPICG VPTCNGIPCK RTGNVNGRCW 120 QHLKYSGSRS SSNDFTPRNS NNGEASDFYE NRTGMAISIC NRNNCSTPIC GVPTCNGTPC 180 KRTGNVNGRC WQHLNYSGSR SSSNDFTPRY SNNDSTGTSI CGAPTRNGSS CRRPVKGNGR 240 CWQHL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012477849.1 | 1e-112 | PREDICTED: uncharacterized protein LOC105793489 | ||||
TrEMBL | A0A1U8M0W6 | 3e-83 | A0A1U8M0W6_GOSHI; protein EFFECTOR OF TRANSCRIPTION 2-like | ||||
STRING | EOY30505 | 7e-52 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2954 | 27 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56780.1 | 5e-19 | effector of transcription2 |