PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D08G0066
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 666aa    MW: 72858.5 Da    PI: 7.5784
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D08G0066genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.44.3e-07262282526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C+ +++ G Ck Gd+C +aHg
  Gh_D08G0066 262 PCPEYRK-GSCKQGDSCEYAHG 282
                  8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.202.2E-1615165IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.8E-1435139IPR020683Ankyrin repeat-containing domain
PfamPF127961.1E-755128IPR020683Ankyrin repeat-containing domain
SMARTSM002480.225989IPR002110Ankyrin repeat
PROSITE profilePS5029713.78859134IPR020683Ankyrin repeat-containing domain
CDDcd002041.03E-1361163No hitNo description
PROSITE profilePS5008810.79394129IPR002110Ankyrin repeat
SMARTSM002480.001694126IPR002110Ankyrin repeat
SMARTSM003562.3E-5257283IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.065257284IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-5258283IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-4262282IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.4E-4289320IPR000571Zinc finger, CCCH-type
SMARTSM0035617292315IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.202292316IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
MGKSTQTGGA TQNFSDLLEL SASNDLISFR IAIEEEGHDI DEPSLWYGRR IGTKKMGFEE  60
RTPLLIASIF GCKDVVNYII KSGQVDVNRA CGSDGARALH CAAAGGSSGS PEIVKILLDA  120
CADINSVDAN GNRPGDLIAP ASCNSDCSSR KKLLEALLKS NVDGREGFPF RVGNEMDVSE  180
VQINSIHRVW KDGNEKKEYP YDLTLPDIKN GMYGTDEFRM YTFKIQPCSR AYSHDWTECP  240
FVHPGENARR RDPRKYAYSC VPCPEYRKGS CKQGDSCEYA HGIFESWLHP AQYRTRLCKD  300
ETNCNRRVCF FAHKPEELRP LYASTGSALP SPRSYSGSGL EFGSMSPLAP ASPSVIKPST  360
STPPLTPTGT NSIGGSMWPN QSSIVPPTLQ LPFSRLKAAR TARGKDLNMD KLNLETHRRF  420
QQQQQQLEQS PTSWNHPLSG ELNRFGGVKS TSLDDIFGSL DSTKPQLQGL PLEAASPQLQ  480
SPTGVPKWQN LNQQLRASYP TNLASSPIMM SPTFGVETSG PTAASSLSSK RSPSVIERPA  540
GNRNSGFSTP ASPVGAMPPN LSDWGSVDGK LDWGIQGEEL KKLRKSASLV FLNNGSNLSN  600
TARSLSSTSE EPEASRVQPD MNGGTHSAGQ VRPEDQKQQK CRNTGNSDML IAWMEQLYKD  660
QDQILN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016719911.10.0PREDICTED: zinc finger CCCH domain-containing protein 66-like isoform X1
RefseqXP_016719912.10.0PREDICTED: zinc finger CCCH domain-containing protein 66-like isoform X2
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A1U8LZC10.0A0A1U8LZC1_GOSHI; zinc finger CCCH domain-containing protein 66-like isoform X1
TrEMBLA0A1U8LZF10.0A0A1U8LZF1_GOSHI; zinc finger CCCH domain-containing protein 66-like isoform X2
TrEMBLA0A2P5S8E70.0A0A2P5S8E7_GOSBA; Uncharacterized protein
STRINGGorai.004G007300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein