PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G1252
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARR-B
Protein Properties Length: 480aa    MW: 54235.4 Da    PI: 5.447
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G1252genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like21.84.1e-07223243121
      G2-like   1 kprlrWtpeLHerFveaveqL 21 
                  kpr+ Wt+eLH+ Fv av+qL
  Gh_D07G1252 223 KPRVIWTQELHDIFVIAVNQL 243
                  79******************9 PP
2G2-like361.5e-112713042656
      G2-like  26 kAtPkti...lelmkvkgLtlehvkSHLQkYRla 56 
                  +A+Pk+i   +++m+v gL++++++SHLQkYRl+
  Gh_D07G1252 271 EAVPKKIlerMQAMNVTGLSRANIASHLQKYRLH 304
                  69*****33335789*****************97 PP
3Response_reg71.72.9e-24361421107
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+++ + +l+++l+k  y ev++++ ++ al+ll+e +  +D++l+D+ mp+mdGl+ll+ i  e  +lp++++++ + +  + + +  Ga 
   Gh_D07G1252  36 VLVVDDNRTCLLVLETMLRKLSY-EVTTCQLARHALALLREDKnrFDIVLCDLHMPEMDGLKLLEIIGLEM-DLPVVMMSSDDGKGVIMKGIIHGAC 130
                   89*********************.***************887778********************996644.8************************ PP

                   EEEESS--HHHH CS
  Response_reg  96 dflsKpfdpeel 107
                   d+l+Kp+++e++
   Gh_D07G1252 131 DYLVKPVQMEAV 142
                   ******999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23002.2E-3733157No hitNo description
SuperFamilySSF521724.98E-3333160IPR011006CheY-like superfamily
SMARTSM004482.3E-2734146IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011040.69735150IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.9E-2136142IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.06E-2437149No hitNo description
SuperFamilySSF466891.29E-11220307IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-20221307IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-9271304IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MTYVVGIKVI ATTYTVCFFN AMDGGFDGDF PAGLKVLVVD DNRTCLLVLE TMLRKLSYEV  60
TTCQLARHAL ALLREDKNRF DIVLCDLHMP EMDGLKLLEI IGLEMDLPVV MMSSDDGKGV  120
IMKGIIHGAC DYLVKPVQME AVRLIWQHVV RKRQRALGDF QQLRGNIHAT GRTLLLKQAK  180
NAVDQMPARE RRILKRAREN DDEDEDDEDD EGELSEEVTT AKKPRVIWTQ ELHDIFVIAV  240
NQLRQRMNNS LLLYLYHSLM EINMLITCLP EAVPKKILER MQAMNVTGLS RANIASHLQK  300
YRLHLRKGGG QPLADNRDVN LNPSIGQASS FNQFNLQFQQ PTAIGSSCNQ LPMQNLMITP  360
QPCTINDSVV PDSTQCFPTE LSTNDLSQPN LLFQNDVPTS NVEHLYRNVG VNVSELSNPI  420
SSLDDSSVNQ LIYEPSVLVR QYDQGDFFHG GFPRSDSYVS VHSNLIFFMI NILIIVILFL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017613816.10.0PREDICTED: two-component response regulator ARR2-like
TrEMBLA0A2P5XNT80.0A0A2P5XNT8_GOSBA; Uncharacterized protein
STRINGGorai.001G142000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2231845
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.27e-74response regulator 1