PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D07G1252 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ARR-B | ||||||||
Protein Properties | Length: 480aa MW: 54235.4 Da PI: 5.447 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 21.8 | 4.1e-07 | 223 | 243 | 1 | 21 |
G2-like 1 kprlrWtpeLHerFveaveqL 21 kpr+ Wt+eLH+ Fv av+qL Gh_D07G1252 223 KPRVIWTQELHDIFVIAVNQL 243 79******************9 PP | |||||||
2 | G2-like | 36 | 1.5e-11 | 271 | 304 | 26 | 56 |
G2-like 26 kAtPkti...lelmkvkgLtlehvkSHLQkYRla 56 +A+Pk+i +++m+v gL++++++SHLQkYRl+ Gh_D07G1252 271 EAVPKKIlerMQAMNVTGLSRANIASHLQKYRLH 304 69*****33335789*****************97 PP | |||||||
3 | Response_reg | 71.7 | 2.9e-24 | 36 | 142 | 1 | 107 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 vl+vdD+++ + +l+++l+k y ev++++ ++ al+ll+e + +D++l+D+ mp+mdGl+ll+ i e +lp++++++ + + + + + Ga Gh_D07G1252 36 VLVVDDNRTCLLVLETMLRKLSY-EVTTCQLARHALALLREDKnrFDIVLCDLHMPEMDGLKLLEIIGLEM-DLPVVMMSSDDGKGVIMKGIIHGAC 130 89*********************.***************887778********************996644.8************************ PP EEEESS--HHHH CS Response_reg 96 dflsKpfdpeel 107 d+l+Kp+++e++ Gh_D07G1252 131 DYLVKPVQMEAV 142 ******999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.2300 | 2.2E-37 | 33 | 157 | No hit | No description |
SuperFamily | SSF52172 | 4.98E-33 | 33 | 160 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 2.3E-27 | 34 | 146 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 40.697 | 35 | 150 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 2.9E-21 | 36 | 142 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.06E-24 | 37 | 149 | No hit | No description |
SuperFamily | SSF46689 | 1.29E-11 | 220 | 307 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-20 | 221 | 307 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.6E-9 | 271 | 304 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 480 aa Download sequence Send to blast |
MTYVVGIKVI ATTYTVCFFN AMDGGFDGDF PAGLKVLVVD DNRTCLLVLE TMLRKLSYEV 60 TTCQLARHAL ALLREDKNRF DIVLCDLHMP EMDGLKLLEI IGLEMDLPVV MMSSDDGKGV 120 IMKGIIHGAC DYLVKPVQME AVRLIWQHVV RKRQRALGDF QQLRGNIHAT GRTLLLKQAK 180 NAVDQMPARE RRILKRAREN DDEDEDDEDD EGELSEEVTT AKKPRVIWTQ ELHDIFVIAV 240 NQLRQRMNNS LLLYLYHSLM EINMLITCLP EAVPKKILER MQAMNVTGLS RANIASHLQK 300 YRLHLRKGGG QPLADNRDVN LNPSIGQASS FNQFNLQFQQ PTAIGSSCNQ LPMQNLMITP 360 QPCTINDSVV PDSTQCFPTE LSTNDLSQPN LLFQNDVPTS NVEHLYRNVG VNVSELSNPI 420 SSLDDSSVNQ LIYEPSVLVR QYDQGDFFHG GFPRSDSYVS VHSNLIFFMI NILIIVILFL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017613816.1 | 0.0 | PREDICTED: two-component response regulator ARR2-like | ||||
TrEMBL | A0A2P5XNT8 | 0.0 | A0A2P5XNT8_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.001G142000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM22318 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16857.2 | 7e-74 | response regulator 1 |