PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D04G1567 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 195aa MW: 22822.2 Da PI: 10.4432 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 61.9 | 7.3e-20 | 17 | 62 | 1 | 46 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 k ienk r vtfskRr gi KK +ELS+LC++e++ i+fs+tgk Gh_D04G1567 17 KMIENKEDRLVTFSKRRLGIYKKISELSILCGTEILFIVFSPTGKP 62 68******************************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 4.84E-24 | 9 | 80 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 23.927 | 9 | 69 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 6.1E-27 | 9 | 68 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-17 | 11 | 31 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.1E-22 | 19 | 65 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-17 | 31 | 46 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-17 | 46 | 67 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MASTGKKTRG RKKTQMKMIE NKEDRLVTFS KRRLGIYKKI SELSILCGTE ILFIVFSPTG 60 KPFSFGCPSV ESVSNHFLSK NRPINDNTNI LIEAYRMVRT NKLVQHYNEV HSQMDEIKRK 120 KRELVSAQQT SETNNTNHWW KTPIHQCNPR ELDELYSRFS ELAHMFHIAW CKKIANASLM 180 PTSTYFGNGH HRREF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1hbx_A | 3e-14 | 2 | 66 | 3 | 67 | SERUM RESPONSE FACTOR |
1hbx_B | 3e-14 | 2 | 66 | 3 | 67 | SERUM RESPONSE FACTOR |
1hbx_D | 3e-14 | 2 | 66 | 3 | 67 | SERUM RESPONSE FACTOR |
1hbx_E | 3e-14 | 2 | 66 | 3 | 67 | SERUM RESPONSE FACTOR |
1k6o_B | 4e-14 | 2 | 66 | 2 | 66 | Serum response factor |
1k6o_C | 4e-14 | 2 | 66 | 2 | 66 | Serum response factor |
1srs_A | 3e-14 | 2 | 66 | 3 | 67 | PROTEIN (SERUM RESPONSE FACTOR (SRF)) |
1srs_B | 3e-14 | 2 | 66 | 3 | 67 | PROTEIN (SERUM RESPONSE FACTOR (SRF)) |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016670090.1 | 7e-70 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A2P5RV12 | 1e-142 | A0A2P5RV12_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.012G147900.1 | 1e-123 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28460.1 | 9e-29 | AGAMOUS-like 59 |