PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D02G1802 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | VOZ | ||||||||
Protein Properties | Length: 451aa MW: 50407.4 Da PI: 5.0581 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 440.1 | 2.9e-135 | 200 | 416 | 1 | 217 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaaelfdl 98 pppsaf+gpkcalwdctrpaqgs+w+qdycssfhatlalne++pgttp+lrp+gi+lkd+ll++a++ak+qgk+vgip+cegaat+kspwna+elfdl Gh_D02G1802 200 PPPSAFMGPKCALWDCTRPAQGSDWFQDYCSSFHATLALNEDPPGTTPILRPGGISLKDNLLLDAVRAKAQGKNVGIPQCEGAATMKSPWNATELFDL 297 89************************************************************************************************ PP VOZ 99 sllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelklvdekksa 196 sllege irewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkef+g+krsyymdpqps+++ewhl+eyei+ +da+alyrlelkl+++kks+ Gh_D02G1802 298 SLLEGEIIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMKEFAGQKRSYYMDPQPSGKYEWHLFEYEIYGCDAFALYRLELKLANQKKSP 395 ************************************************************************************************** PP VOZ 197 kgkvskdsladlqkklgrlta 217 k+kv kdsladlqkk+grlta Gh_D02G1802 396 KAKVPKDSLADLQKKMGRLTA 416 *******************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 451 aa Download sequence Send to blast |
MQNNSSKNKC TSASHQQMVD NAKNRLNFLQ EQFTDLQAAR KEGRAGDVAV LEEQVYQNLR 60 EWKAELCTPS PASSLLGSLG SFSDDINRLL QLYEEEDDAT SPLKEPAVLK PEIDDQSLNP 120 STLPVIPEDY FVTHEPQEQS FQGFDLCKVS TSANADINYQ LDYHPFDLQQ DFDHEHLLDA 180 NGTEDYVKDA NSNMLPNISP PPSAFMGPKC ALWDCTRPAQ GSDWFQDYCS SFHATLALNE 240 DPPGTTPILR PGGISLKDNL LLDAVRAKAQ GKNVGIPQCE GAATMKSPWN ATELFDLSLL 300 EGEIIREWLF FDKPRRAFES GNRKQRSLPD YSGRGWHESR KQVMKEFAGQ KRSYYMDPQP 360 SGKYEWHLFE YEIYGCDAFA LYRLELKLAN QKKSPKAKVP KDSLADLQKK MGRLTAEVPG 420 DDKPPGKGKT KANKKAATAA AAVANVNSAQ D |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.8321 | 0.0 | boll| ovule |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. Expressed in the vascular bundles of various tissues, specifically in the phloem. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC166092 | 9e-35 | AC166092.4 Glycine max cultivar Williams 82 clone gmw1-93l19, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016692526.1 | 0.0 | PREDICTED: transcription factor VOZ1-like isoform X1 | ||||
Refseq | XP_016692527.1 | 0.0 | PREDICTED: transcription factor VOZ1-like isoform X1 | ||||
Refseq | XP_016692528.1 | 0.0 | PREDICTED: transcription factor VOZ1-like isoform X1 | ||||
Swissprot | Q9SGQ0 | 1e-177 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | A0A1U8JQH1 | 0.0 | A0A1U8JQH1_GOSHI; transcription factor VOZ1-like isoform X1 | ||||
STRING | Gorai.005G198500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11060 | 25 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 1e-170 | vascular plant one zinc finger protein |
Publications ? help Back to Top | |||
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