PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D02G1724
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 268aa    MW: 30450.8 Da    PI: 4.5967
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D02G1724genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.54.6e-184396457
                 -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
     Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                 ++++t++q+e Le+ Fe ++++  +++ +LAk+lgL+ rqV +WFqNrRa+ k+
  Gh_D02G1724 43 KRRLTATQVEFLERSFEVENKLESDRKLRLAKELGLQPRQVAIWFQNRRARSKN 96
                 5689***********************************************995 PP
2HD-ZIP_I/II120.96.5e-3942131291
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  kkrrl++ qv++LE+sFe e+kLe++rK +la+eLglqprqva+WFqnrRAR k+kqlEkdy++L++++d+lk++ ++L ke+++L++++
  Gh_D02G1724  42 KKRRLTATQVEFLERSFEVENKLESDRKLRLAKELGLQPRQVAIWFQNRRARSKNKQLEKDYDSLRATFDKLKADFDNLLKEKDDLKNQV 131
                  9**************************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.98E-192999IPR009057Homeodomain-like
PROSITE profilePS5007116.8763797IPR001356Homeobox domain
SMARTSM003893.0E-1740101IPR001356Homeobox domain
PfamPF000461.9E-154295IPR001356Homeobox domain
CDDcd000862.41E-174298No hitNo description
Gene3DG3DSA:1.10.10.601.2E-1844104IPR009057Homeodomain-like
PRINTSPR000311.3E-56877IPR000047Helix-turn-helix motif
PROSITE patternPS0002707295IPR017970Homeobox, conserved site
PRINTSPR000311.3E-57793IPR000047Helix-turn-helix motif
PfamPF021831.6E-1597138IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MEPLWTPSST SSVLQGEKPV MEYEYVNGGD DLDGSCQPAG VKKRRLTATQ VEFLERSFEV  60
ENKLESDRKL RLAKELGLQP RQVAIWFQNR RARSKNKQLE KDYDSLRATF DKLKADFDNL  120
LKEKDDLKNQ VLALKEKLLI KEKGMENLGS VEAIHSSNDE PQKPNPDASH VPLLACKQEE  180
ACSAKSDVFD SDSPHYTDGH GYHSSFIEPT DSSNVFEPDQ SDEEDDLSKS LLHPPLFFPK  240
FDCYYDAPAT SCNFSLPVED QSFWSSLY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18997RRARSKNKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.152960.0boll
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016692656.10.0PREDICTED: homeobox-leucine zipper protein HAT5-like isoform X1
TrEMBLA0A1U8JQW90.0A0A1U8JQW9_GOSHI; homeobox-leucine zipper protein HAT5-like isoform X1
STRINGGorai.005G189800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54528143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-37homeobox 1