PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D01G1353 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 568aa MW: 62207.1 Da PI: 9.0233 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.2 | 2.9e-05 | 69 | 91 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H Gh_D01G1353 69 FICEVCNKGFQREQNLQLHRRGH 91 89*******************88 PP | |||||||
2 | zf-C2H2 | 13.2 | 0.00027 | 145 | 167 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ Gh_D01G1353 145 WKCEKCSKRYAVQSDWKAHSKTC 167 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 6.3E-6 | 68 | 91 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.07E-7 | 68 | 91 | No hit | No description |
Pfam | PF12171 | 2.8E-5 | 69 | 91 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 10.99 | 69 | 91 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0052 | 69 | 91 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 71 | 91 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 130 | 110 | 140 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.0E-5 | 133 | 166 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.07E-7 | 140 | 165 | No hit | No description |
SMART | SM00355 | 130 | 145 | 165 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 568 aa Download sequence Send to blast |
MASPLSVEDL LELEKRTNTS ILQQHQLQLW GQLHRRLRGK RETNQSYQAN PDVEVIALSP 60 KSLMATNRFI CEVCNKGFQR EQNLQLHRRG HNLPWKLRQK TTKEVKRKVY LCPEPTCVHH 120 DPSRALGDLT GIKKHYSRKH GEKKWKCEKC SKRYAVQSDW KAHSKTCGTR EYRCDCGTLF 180 SRRDSFITHR AFCDALAQEN ARQPPSFNSI GNHLYGSTSN MSLGLSQVGT QMSSVQDQTS 240 NNSGGRDIFK LGGVARSTQF DHLLLSPSMG SSSSSFRPQQ SMVSSAAFFM PESNQEHHPQ 300 QGILGNNKQY HQGLMMQFPA DIQNNTTNTP SPPSFFNLSF LSNCGNGTNP DANLTSSGLL 360 TPEHFDNETG GGGGGTSEAS DPFSNTVMGN QITTNIPSVF AQSNNIAVQM SATALLQKAA 420 QMGSTSSYKN ASLMRSFGNS NFGGTLGDST GNNLHELMNS IAGGGSNTFS FGHGQENPYA 480 NRSSVEQEKH VEQQPQILNV SGGGGSDRLT RDFLGVGQIV RSMSMGGVSQ REQQQQQQAM 540 GLSALGSERS NITAPTNHQC LGGNGNFQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-34 | 141 | 202 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 1e-34 | 141 | 202 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 34 | 41 | RRLRGKRE |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.22861 | 0.0 | boll |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in leaf tissues. {ECO:0000305|PubMed:22898356}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX614588 | 0.0 | JX614588.1 Gossypium hirsutum clone NBRI_GE58088 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016708102.1 | 0.0 | PREDICTED: protein indeterminate-domain 5, chloroplastic-like | ||||
Swissprot | Q9ZUL3 | 1e-130 | IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic | ||||
TrEMBL | A0A1U8L0G3 | 0.0 | A0A1U8L0G3_GOSHI; protein indeterminate-domain 5, chloroplastic-like | ||||
STRING | Gorai.002G169100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4373 | 26 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02070.1 | 1e-112 | indeterminate(ID)-domain 5 |
Publications ? help Back to Top | |||
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