PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D01G0064
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 466aa    MW: 53270.6 Da    PI: 8.4433
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D01G0064genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.82.3e-19120209299
                  EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  +k ++ps+v+   +l lpk+f+ +h  +k e+++++lede+g++++vk+ ++k +    l++GW++F  a++L egD++vF+l++ s+f  +v ++rk
  Gh_D01G0064 120 IKYMLPSHVTGGFWLGLPKHFCLNHL-PK-EDRMMVLEDEEGKEFQVKYLVEKIG----LSGGWRGFSIAHKLLEGDVCVFHLVRPSKF--KVYIVRK 209
                  57899*****************9884.33.5679***************555555....************************998999..8888886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-22112211IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-25114213IPR015300DNA-binding pseudobarrel domain
CDDcd100173.46E-26117208No hitNo description
PROSITE profilePS5086313.211119210IPR003340B3 DNA binding domain
SMARTSM010191.3E-21119210IPR003340B3 DNA binding domain
PfamPF023621.9E-17120209IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MFYVCMYVFS EVPKACKLSQ ALFFSYINSS YITYISIPTC SMFQVSRGRG RPPKTKLFRK  60
KVPAMTVNQI VSYEKEKAQC NKRKRATYDE VYENGQTKLA VMERALDIQA NLSSEFPSMI  120
KYMLPSHVTG GFWLGLPKHF CLNHLPKEDR MMVLEDEEGK EFQVKYLVEK IGLSGGWRGF  180
SIAHKLLEGD VCVFHLVRPS KFKVYIVRKK CSDEVDVALG LLKLESSTQL VDNGKELKIC  240
EISVGKTEDR NAPILYSSNI EPTVDQSKNN RVDLGSEVSD GVRLSDSIVN FREVKSFEDF  300
NILVNGLVID SEFSKYLQMK YYELCCDQNS FLHENLLEGL NCKLVAGVIA ETINIADAIR  360
AAKLTTPHDS FLTWDKTLRS FEGLGMKVGF LRARLDKLMN LLTKSRRYKE VKLEQANSNE  420
EKLKLEAKLA EVTHTLTKLD REIRLFKQEK ADDLEALFRE VANGPW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016715753.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X1
TrEMBLA0A0D2PYT00.0A0A0D2PYT0_GOSRA; Uncharacterized protein
STRINGGorai.002G007600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16718911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-41B3 family protein