PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A12G2534 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 262aa MW: 28897.3 Da PI: 6.377 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.3 | 8.5e-11 | 147 | 194 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq Gh_A12G2534 147 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 194 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 9.16E-18 | 141 | 210 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.88E-10 | 141 | 198 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 7.3E-18 | 143 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.828 | 143 | 193 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.7E-8 | 147 | 194 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-10 | 149 | 199 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MDPPAMMSDG RYNLAEIWQY PMSESGISRG QFGHGLAQFG DPSREISGND PVSLELQQRR 60 GGMRRRRDGE DETAKVVSTS STSSGNAVND GEGKRIKAAG GREQNHESRV EAEPSSGKLV 120 EEKVQPSEPP KQDYIHVRAR RGQATDSHSL AERARREKIS ERMKILQDLV PGCNKVIGKA 180 LVLDEIINYI QSLQRQVEFL SMKLEAVNSG INPAIEVFPC KDYGQQAFDA TGMAFGSQVI 240 KEYSGGTSPE WLHIGSAFER TT |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.10224 | 0.0 | boll| ovule |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016713903.1 | 0.0 | PREDICTED: transcription factor BPE-like | ||||
Swissprot | Q69WS3 | 2e-75 | BH094_ORYSJ; Transcription factor BHLH094 | ||||
TrEMBL | A0A1U8LKD0 | 0.0 | A0A1U8LKD0_GOSHI; transcription factor BPE-like | ||||
STRING | Gorai.008G053100.1 | 1e-170 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1855 | 28 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59640.1 | 8e-87 | BIG PETAL P |