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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Gh_A12G1861 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
BBR-BPC |
Protein Properties |
Length: 234aa MW: 25447.3 Da PI: 10.5208 |
Description |
BBR-BPC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Gh_A12G1861 | genome | NAU-NBI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GAGA_bind | 243.8 | 1.2e-74 | 46 | 234 | 113 | 301 |
GAGA_bind 113 qlsepqledsave..lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestl 208
++ep l s++ + +e +++ + ++++++ ++k++ k++++ pk+ k++ kk++ +kk + ++ +++k+ekk+ +++l+g ++D s++
Gh_A12G1861 46 IHHEPGLIVSPIRtiAATTESGNNNDLGTKTTKVGKQKSSVKGSNQIAPKVLGPKQPMKKPSLPKKGKGASI--PETKREKKNPNINLDGTKFDFSGV 141
455555555555433445566677778888889999999999999999**9999999998877755554444..79********************** PP
GAGA_bind 209 PvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
P P+CsCtG+ r+CYkWG+ GWqS+CCt++iS PLP+s++r+gaR+agrKmS+ga+ klL +LaaeGydls+pvDLkdhWA+HGtnkfvti+
Gh_A12G1861 142 PSPICSCTGVARVCYKWGASGWQSSCCTINISECPLPMSPTRPGARVAGRKMSNGAYFKLLLRLAAEGYDLSHPVDLKDHWARHGTNKFVTIK 234
********************************************************************************************8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 234 aa
Download sequence Send
to blast |
MKMRSYSDKN VMPETEIGST GSPFSWLYHY NPTSKPGFSS LQRTGIHHEP GLIVSPIRTI 60 AATTESGNNN DLGTKTTKVG KQKSSVKGSN QIAPKVLGPK QPMKKPSLPK KGKGASIPET 120 KREKKNPNIN LDGTKFDFSG VPSPICSCTG VARVCYKWGA SGWQSSCCTI NISECPLPMS 180 PTRPGARVAG RKMSNGAYFK LLLRLAAEGY DLSHPVDLKD HWARHGTNKF VTIK
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in anthers, in pollen grains, in young rosette, in leaf vasculature, in the lateral and primary roots, in embryo sac, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |