PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G1861
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family BBR-BPC
Protein Properties Length: 234aa    MW: 25447.3 Da    PI: 10.5208
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G1861genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind243.81.2e-7446234113301
    GAGA_bind 113 qlsepqledsave..lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestl 208
                   ++ep l  s++   +  +e  +++ + ++++++ ++k++ k++++  pk+   k++ kk++ +kk + ++   +++k+ekk+ +++l+g ++D s++
  Gh_A12G1861  46 IHHEPGLIVSPIRtiAATTESGNNNDLGTKTTKVGKQKSSVKGSNQIAPKVLGPKQPMKKPSLPKKGKGASI--PETKREKKNPNINLDGTKFDFSGV 141
                  455555555555433445566677778888889999999999999999**9999999998877755554444..79********************** PP

    GAGA_bind 209 PvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                  P P+CsCtG+ r+CYkWG+ GWqS+CCt++iS  PLP+s++r+gaR+agrKmS+ga+ klL +LaaeGydls+pvDLkdhWA+HGtnkfvti+
  Gh_A12G1861 142 PSPICSCTGVARVCYKWGASGWQSSCCTINISECPLPMSPTRPGARVAGRKMSNGAYFKLLLRLAAEGYDLSHPVDLKDHWARHGTNKFVTIK 234
                  ********************************************************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012268.4E-771234IPR010409GAGA-binding transcriptional activator
PfamPF062174.0E-6677234IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MKMRSYSDKN VMPETEIGST GSPFSWLYHY NPTSKPGFSS LQRTGIHHEP GLIVSPIRTI  60
AATTESGNNN DLGTKTTKVG KQKSSVKGSN QIAPKVLGPK QPMKKPSLPK KGKGASIPET  120
KREKKNPNIN LDGTKFDFSG VPSPICSCTG VARVCYKWGA SGWQSSCCTI NISECPLPMS  180
PTRPGARVAG RKMSNGAYFK LLLRLAAEGY DLSHPVDLKD HWARHGTNKF VTIK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in anthers, in pollen grains, in young rosette, in leaf vasculature, in the lateral and primary roots, in embryo sac, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016736741.11e-174PREDICTED: protein BASIC PENTACYSTEINE7-like
RefseqXP_016736742.11e-174PREDICTED: protein BASIC PENTACYSTEINE7-like
RefseqXP_016736743.11e-174PREDICTED: protein BASIC PENTACYSTEINE7-like
SwissprotO822862e-71BPC7_ARATH; Protein BASIC PENTACYSTEINE7
TrEMBLA0A0B0PPB91e-173A0A0B0PPB9_GOSAR; Basic pentacysteine7-like protein
STRINGGorai.008G222300.11e-172(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136742127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35550.43e-73basic pentacysteine 7