PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A12G1545 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bZIP | ||||||||
Protein Properties | Length: 459aa MW: 50379.5 Da PI: 6.717 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 31.2 | 4.8e-10 | 173 | 211 | 5 | 43 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 k rr+++NReAAr+sR+RKka++++Le L++ + Gh_A12G1545 173 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLRLTELEQ 211 788*************************86666555554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.1E-7 | 165 | 216 | No hit | No description |
SMART | SM00338 | 5.1E-10 | 169 | 240 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF07716 | 3.6E-7 | 171 | 215 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.438 | 171 | 215 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 7.74E-7 | 173 | 216 | No hit | No description |
CDD | cd14708 | 7.21E-24 | 173 | 225 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 176 | 191 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 8.1E-30 | 258 | 331 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 459 aa Download sequence Send to blast |
MQSFKAAATT NPDMFCHSSF FLRGDDCNSR NQTRFPDLGE LDHSAAAFHH DDAFDLSPSS 60 IFSLKSNNVG VVANCLHYGA LNTSIGATAI VSSGTGCLDT GQFMYQKGAT FGASLGNGHI 120 ENWADSGLAD NSQQTDTSTD VDTDHKNQLH GVQNAAVMVD SVDQSKSKSG DQKTLRRLAQ 180 NREAARKSRL RKKAYVQQLE SSRLRLTELE QELQRARQQG IFIASGLSGD HGHTVAGNAA 240 LAFDMEYGRW LDEHQRLIND LRSAVNSHMG DNELCILVGG VMAHYDEVFR LKSIGAKADV 300 FHMLSGMWKT PAERCFMWLG GFRSSELLKI LGNHLEPLTD QQLMGICNLQ QSSQQAEDAL 360 SQGMEALQQS LVDTLSSASL GPSASGNVAD YMGQMAIAMG KLATLENFLH QADLLRQQTL 420 QQMQRILTTR QAARALLVFS DYTSRLRALS SLWLARPRN |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.25255 | 0.0 | boll| ovule |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the apical meristem, the floral meristem, each whorl of organ primordia, and in ovule primordia during wild-type flower development. {ECO:0000269|PubMed:9990857}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1. {ECO:0000269|PubMed:19395638, ECO:0000269|PubMed:19395639, ECO:0000269|PubMed:9990857}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016703669.1 | 0.0 | PREDICTED: transcription factor HBP-1b(c38)-like isoform X1 | ||||
Refseq | XP_016703670.1 | 0.0 | PREDICTED: transcription factor HBP-1b(c38)-like isoform X1 | ||||
Swissprot | Q9SX27 | 0.0 | PAN_ARATH; Transcription factor PERIANTHIA | ||||
TrEMBL | A0A1U8KMK4 | 0.0 | A0A1U8KMK4_GOSHI; transcription factor HBP-1b(C38)-like isoform X1 | ||||
TrEMBL | A0A2P5W3Z9 | 0.0 | A0A2P5W3Z9_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.008G185000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM667 | 28 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68640.1 | 1e-135 | bZIP family protein |