PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A12G1505

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 281aa MW: 32531.7 Da PI: 8.1682

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A12G1505	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	175.9	1.1e-54	11	136	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdeel+++yLk+++++k++++ ++i+evdiyk++Pw+Lp k++ +e+ewyfFs+rd+ky++g r+nrat sgyWkatg+dk+++s +++ Gh_A12G1505 11 LPPGFRFHPTDEELIMFYLKNQAKSKPCPV-SIIPEVDIYKFDPWQLPDKAEFGENEWYFFSPRDRKYPNGVRPNRATVSGYWKATGTDKAIHS-GSK 106 79**************************.89***********99999**************************************.99 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 vg+kk Lvfy+gr pkg+kt+W+mheyrl Gh_A12G1505 107 YVGVKKALVFYNGRPPKGVKTNWIMHEYRL 136 ****************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-66	8	163	IPR003441	NAC domain
PROSITE profile	PS51005	61.151	11	163	IPR003441	NAC domain
Pfam	PF02365	2.7E-27	12	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009825	Biological Process	multidimensional cell growth
GO:0009835	Biological Process	fruit ripening
GO:0009908	Biological Process	flower development
GO:0010150	Biological Process	leaf senescence
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MERNTSSKSD LPPGFRFHPT DEELIMFYLK NQAKSKPCPV SIIPEVDIYK FDPWQLPDKA 60 EFGENEWYFF SPRDRKYPNG VRPNRATVSG YWKATGTDKA IHSGSKYVGV KKALVFYNGR 120 PPKGVKTNWI MHEYRLSDSH KQIKKHNGSM RLDDWVLCRI YKKKNSAEKI LDHKVEESNT 180 QIDRVGYSND DSESQELLKF PKTGSYSRLL ELDYMGPVSH LLNENTYISS FDFPNTIANI 240 GIEDVEKLQL GDIPYNYSTE SGNFQVNQNG ILMNPMVYQF Q

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-73	2	169	8	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-73	2	169	8	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-73	2	169	8	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-73	2	169	8	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-73	2	169	11	174	NAC domain-containing protein 19
3swm_B	1e-73	2	169	11	174	NAC domain-containing protein 19
3swm_C	1e-73	2	169	11	174	NAC domain-containing protein 19
3swm_D	1e-73	2	169	11	174	NAC domain-containing protein 19
3swp_A	1e-73	2	169	11	174	NAC domain-containing protein 19
3swp_B	1e-73	2	169	11	174	NAC domain-containing protein 19
3swp_C	1e-73	2	169	11	174	NAC domain-containing protein 19
3swp_D	1e-73	2	169	11	174	NAC domain-containing protein 19
4dul_A	1e-73	2	169	8	171	NAC domain-containing protein 19
4dul_B	1e-73	2	169	8	171	NAC domain-containing protein 19
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stem, flowers, and leaves. {ECO:0000269\|PubMed:29760199}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269\|PubMed:29760199}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00221	DAP	Transfer from AT1G69490	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269\|PubMed:29760199}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016703840.1	0.0	PREDICTED: NAC transcription factor 29-like
Refseq	XP_017636405.1	0.0	PREDICTED: NAC transcription factor 29
Swissprot	K4BNG7	1e-114	NAP2_SOLLC; NAC domain-containing protein 2
TrEMBL	A0A0B0PXX8	0.0	A0A0B0PXX8_GOSAR; NAC domain-containing 29-like protein
TrEMBL	A0A1U8KN22	0.0	A0A1U8KN22_GOSHI; NAC transcription factor 29-like
STRING	Gorai.008G179900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7707	26	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	1e-116	NAC-like, activated by AP3/PI

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Ma X, et al. The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato. Plant Physiol., 2018. 177(3): p. 1286-1302 [PMID:29760199]