PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A12G1125 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | GRAS | ||||||||
Protein Properties | Length: 596aa MW: 67342.7 Da PI: 5.1737 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 272.6 | 1.2e-83 | 212 | 582 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalpps.etsekn.sseelaalkl.fsevsPilkfs 94 lv+lLl++Ae v +++e+a++lL+r + +as++++p+qR++ yf+e+L++r+ ++ ++k ++ +t +n ++l + + +e P+++++ Gh_A12G1125 212 LVHLLLTAAEKVGYEQFERASRLLSRCEWIASERASPVQRIVYYFAEGLRERIDTgMGRIIAKEPEMIfKTGIENgLNTNLIS--VrIHEYVPFFQVT 307 68***************************************************995555555555333033223323333333..2489********* PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191 +++ qaIle v++++++HiiD+++ G+QW L+qaLa+R+ + l+iT+vg + +e++ etg+rL+++A+++++pf+f +++++++ed++ Gh_A12G1125 308 QFMGIQAILENVASASKIHIIDLELRSGVQWTGLMQALAEREiRHVEILKITAVGF---VGNEKIAETGKRLESVAASFKLPFSFIAVYVEDMEDIKE 402 ******************************************88888*********...78************************************* PP GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289 e +++ ++E+laV + l l ++ + +++le+ +++++k+l+P++v+v+e ea+hns+sF++rf+eal +ys++fd+l++ l +e e r+ vE + Gh_A12G1125 403 ELFKIGNNESLAVFCPLVLRTMISIPTCLEN----LMRVMKNLNPTIVIVIEIEANHNSPSFVNRFIEALFFYSTFFDCLDTCLEHEGELRAEVESV- 495 **********************988888888....*************************************************************9. PP GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdg.yrveeesgslvlgWkdrpLvsvSaWr 374 l + i n+va+eg+er+ r +le W++ + ++ ++++ +se+ q +l++++++ ++++ +s++ gWk+ p+ svSaW+ Gh_A12G1125 496 LCNGIWNIVATEGKERVVRSVKLEVWSAFFARFRMTELGFSESSLYQGSLVIKQFPsAVSyCTLDKCGKSVIVGWKGTPVQSVSAWK 582 999*****************************************************6434257778899999**************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 39.375 | 186 | 560 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.2E-81 | 212 | 582 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 596 aa Download sequence Send to blast |
MDNGLFPFSS PFDFNGIQGN YNLPDFEKDG TVIKGKHDPL FGFQEIGDDP DNDPVFPNYG 60 LYPNVTKMSE NQEQQQGRAA TKSAFSDEYS FSSVFSGNMV FQEFSRPENM KPIKDSNMQS 120 SCRSSSLELL TNYGNGFKKL RFSKYVGSDG GDGTDERGGS QKKLSAEEIM RVTGARYIQL 180 SDMRYDDFSM IMHPFGHALS GLSDDEKKDV ELVHLLLTAA EKVGYEQFER ASRLLSRCEW 240 IASERASPVQ RIVYYFAEGL RERIDTGMGR IIAKEPEMIF KTGIENGLNT NLISVRIHEY 300 VPFFQVTQFM GIQAILENVA SASKIHIIDL ELRSGVQWTG LMQALAEREI RHVEILKITA 360 VGFVGNEKIA ETGKRLESVA ASFKLPFSFI AVYVEDMEDI KEELFKIGNN ESLAVFCPLV 420 LRTMISIPTC LENLMRVMKN LNPTIVIVIE IEANHNSPSF VNRFIEALFF YSTFFDCLDT 480 CLEHEGELRA EVESVLCNGI WNIVATEGKE RVVRSVKLEV WSAFFARFRM TELGFSESSL 540 YQGSLVIKQF PSAVSYCTLD KCGKSVIVGW KGTPVQSVSA WKFSRDRGRV FGNYRF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 8e-34 | 220 | 581 | 27 | 378 | Protein SCARECROW |
5b3h_A | 7e-34 | 220 | 581 | 26 | 377 | Protein SCARECROW |
5b3h_D | 7e-34 | 220 | 581 | 26 | 377 | Protein SCARECROW |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017635883.1 | 0.0 | PREDICTED: DELLA protein RGL1-like | ||||
TrEMBL | A0A2P5YIW1 | 0.0 | A0A2P5YIW1_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.008G139000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16533 | 9 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 2e-52 | RGA-like 1 |