PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G1125
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 596aa    MW: 67342.7 Da    PI: 5.1737
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G1125genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS272.61.2e-832125821374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalpps.etsekn.sseelaalkl.fsevsPilkfs 94 
                  lv+lLl++Ae v  +++e+a++lL+r + +as++++p+qR++ yf+e+L++r+   ++  ++k  ++  +t  +n   ++l +  +  +e  P+++++
  Gh_A12G1125 212 LVHLLLTAAEKVGYEQFERASRLLSRCEWIASERASPVQRIVYYFAEGLRERIDTgMGRIIAKEPEMIfKTGIENgLNTNLIS--VrIHEYVPFFQVT 307
                  68***************************************************995555555555333033223323333333..2489********* PP

         GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                  +++  qaIle v++++++HiiD+++  G+QW  L+qaLa+R+ +    l+iT+vg    + +e++ etg+rL+++A+++++pf+f +++++++ed++ 
  Gh_A12G1125 308 QFMGIQAILENVASASKIHIIDLELRSGVQWTGLMQALAEREiRHVEILKITAVGF---VGNEKIAETGKRLESVAASFKLPFSFIAVYVEDMEDIKE 402
                  ******************************************88888*********...78************************************* PP

         GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289
                  e +++ ++E+laV + l l ++ + +++le+    +++++k+l+P++v+v+e ea+hns+sF++rf+eal +ys++fd+l++ l +e e r+ vE + 
  Gh_A12G1125 403 ELFKIGNNESLAVFCPLVLRTMISIPTCLEN----LMRVMKNLNPTIVIVIEIEANHNSPSFVNRFIEALFFYSTFFDCLDTCLEHEGELRAEVESV- 495
                  **********************988888888....*************************************************************9. PP

         GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdg.yrveeesgslvlgWkdrpLvsvSaWr 374
                  l + i n+va+eg+er+ r  +le W++ + ++ ++++ +se+   q +l++++++      ++++  +s++ gWk+ p+ svSaW+
  Gh_A12G1125 496 LCNGIWNIVATEGKERVVRSVKLEVWSAFFARFRMTELGFSESSLYQGSLVIKQFPsAVSyCTLDKCGKSVIVGWKGTPVQSVSAWK 582
                  999*****************************************************6434257778899999**************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.375186560IPR005202Transcription factor GRAS
PfamPF035144.2E-81212582IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MDNGLFPFSS PFDFNGIQGN YNLPDFEKDG TVIKGKHDPL FGFQEIGDDP DNDPVFPNYG  60
LYPNVTKMSE NQEQQQGRAA TKSAFSDEYS FSSVFSGNMV FQEFSRPENM KPIKDSNMQS  120
SCRSSSLELL TNYGNGFKKL RFSKYVGSDG GDGTDERGGS QKKLSAEEIM RVTGARYIQL  180
SDMRYDDFSM IMHPFGHALS GLSDDEKKDV ELVHLLLTAA EKVGYEQFER ASRLLSRCEW  240
IASERASPVQ RIVYYFAEGL RERIDTGMGR IIAKEPEMIF KTGIENGLNT NLISVRIHEY  300
VPFFQVTQFM GIQAILENVA SASKIHIIDL ELRSGVQWTG LMQALAEREI RHVEILKITA  360
VGFVGNEKIA ETGKRLESVA ASFKLPFSFI AVYVEDMEDI KEELFKIGNN ESLAVFCPLV  420
LRTMISIPTC LENLMRVMKN LNPTIVIVIE IEANHNSPSF VNRFIEALFF YSTFFDCLDT  480
CLEHEGELRA EVESVLCNGI WNIVATEGKE RVVRSVKLEV WSAFFARFRM TELGFSESSL  540
YQGSLVIKQF PSAVSYCTLD KCGKSVIVGW KGTPVQSVSA WKFSRDRGRV FGNYRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-3422058127378Protein SCARECROW
5b3h_A7e-3422058126377Protein SCARECROW
5b3h_D7e-3422058126377Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017635883.10.0PREDICTED: DELLA protein RGL1-like
TrEMBLA0A2P5YIW10.0A0A2P5YIW1_GOSBA; Uncharacterized protein
STRINGGorai.008G139000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16533913
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.12e-52RGA-like 1