PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A10G1796 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 444aa MW: 49348.4 Da PI: 5.9627 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 173.6 | 5.9e-54 | 32 | 159 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 l+pGfrFhPtdeelv++yLk+kv++k++++ ++++evdiyk+ePwdL +k++++++ewyfFs dkky +g r nrat++gyWkatgkd+ev + + Gh_A10G1796 32 LAPGFRFHPTDEELVSYYLKRKVSNKPVRF-NAMAEVDIYKHEPWDLSdkAKLQTRDQEWYFFSLLDKKYGNGGRMNRATNQGYWKATGKDREVRH-N 127 579************************999.89**************85348888999**************************************.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ++l+g+kktLvf++grap+g +t+Wvmheyrl Gh_A10G1796 128 TQLIGMKKTLVFHSGRAPDGMRTNWVMHEYRL 159 99****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-61 | 29 | 183 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.982 | 32 | 182 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.6E-28 | 34 | 159 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 444 aa Download sequence Send to blast |
MGGETSLTLV SGPTSPPPSA AAAKTGGSAT ALAPGFRFHP TDEELVSYYL KRKVSNKPVR 60 FNAMAEVDIY KHEPWDLSDK AKLQTRDQEW YFFSLLDKKY GNGGRMNRAT NQGYWKATGK 120 DREVRHNTQL IGMKKTLVFH SGRAPDGMRT NWVMHEYRLA EEELEKIGAL QQGYVLCRVF 180 HKNNIGPPNG NRYAPFIEAE WDDGSIPLVL GVDTGDDGVA GNVAIAGNDV ATTENAAVEN 240 NADHMIGSEQ ETEHAGKDAL PNDEVPREML NDKTDDCPPL PPCKVERPDD CPPICMLNRE 300 ASLPLLRYKR RRHTDLGPNH ANASENSTRT TQDRCSSTTT TTSPSSATTT AISALLEFSL 360 MESLELKENN HRVPPPTFDI ANLDSVVPPS CMKLINELQK EIRKISVERE SLKLEMMSAQ 420 TMINILHSRI DSLSKENEEL KRSN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-45 | 31 | 184 | 16 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-45 | 31 | 184 | 16 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-45 | 31 | 184 | 16 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-45 | 31 | 184 | 16 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-45 | 31 | 184 | 19 | 170 | NAC domain-containing protein 19 |
3swm_B | 1e-45 | 31 | 184 | 19 | 170 | NAC domain-containing protein 19 |
3swm_C | 1e-45 | 31 | 184 | 19 | 170 | NAC domain-containing protein 19 |
3swm_D | 1e-45 | 31 | 184 | 19 | 170 | NAC domain-containing protein 19 |
3swp_A | 1e-45 | 31 | 184 | 19 | 170 | NAC domain-containing protein 19 |
3swp_B | 1e-45 | 31 | 184 | 19 | 170 | NAC domain-containing protein 19 |
3swp_C | 1e-45 | 31 | 184 | 19 | 170 | NAC domain-containing protein 19 |
3swp_D | 1e-45 | 31 | 184 | 19 | 170 | NAC domain-containing protein 19 |
4dul_A | 1e-45 | 31 | 184 | 16 | 167 | NAC domain-containing protein 19 |
4dul_B | 1e-45 | 31 | 184 | 16 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in floral organs, and, at low levels, in other organs. {ECO:0000269|PubMed:25578968}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC050 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). Regulates siRNA-dependent post-transcriptional gene silencing (PTGS) through SGS3 expression modulation (PubMed:28207953). Required during pollen development (PubMed:19237690). {ECO:0000269|PubMed:19237690, ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990, ECO:0000269|PubMed:28207953}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by type III effector proteins (TTEs) secreted by the pathogenic bacteria P.syringae pv. tomato DC3000 during basal defense. {ECO:0000269|PubMed:16553893}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC847246 | 1e-179 | KC847246.1 Gossypium hirsutum NAC domain protein NAC69 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017646601.1 | 0.0 | PREDICTED: NAC domain-containing protein 45-like isoform X1 | ||||
Swissprot | Q9SQY0 | 1e-149 | NAC52_ARATH; NAC domain containing protein 52 | ||||
TrEMBL | A0A2P5WEW0 | 0.0 | A0A2P5WEW0_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.011G234200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1780 | 28 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10480.2 | 1e-129 | NAC domain containing protein 50 |
Publications ? help Back to Top | |||
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