PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A09G1063 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 217aa MW: 24600.2 Da PI: 8.9573 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 68.1 | 8.4e-22 | 16 | 64 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+i k n qvtfskRr+ ++KKA+EL++LC++++a+i+fs+ gk++ + Gh_A09G1063 16 KKIAKKNNLQVTFSKRRAELFKKASELCTLCGVDIAIIVFSPAGKVFSF 64 678999****************************************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 22.792 | 8 | 68 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.9E-29 | 8 | 67 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.42E-33 | 9 | 83 | No hit | No description |
SuperFamily | SSF55455 | 9.42E-26 | 9 | 90 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.8E-17 | 10 | 30 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.3E-24 | 17 | 64 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.8E-17 | 30 | 45 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.8E-17 | 45 | 66 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MVQKNAIQGR QKITMKKIAK KNNLQVTFSK RRAELFKKAS ELCTLCGVDI AIIVFSPAGK 60 VFSFGHPNVE SAVHRFLTRN TSSMHYDIVE AHPNANIREL NAQIAHLLEM LEGEKRKGQA 120 LDEEREAGRR QCWWQAPIHE LGLSELQQLR NAMEELKRNV GKQANLMQAA VECSNDWPFL 180 KPNGVGISNF GTQENEMNAS SSITQMHKFG PDLYFDF |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the final stages of embryo sac development. {ECO:0000269|PubMed:18713950}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed exclusively in the central cell of the female gametophyte and in early endosperm. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016670086.1 | 1e-163 | PREDICTED: agamous-like MADS-box protein AGL61 | ||||
Swissprot | Q4PSU4 | 2e-49 | AGL61_ARATH; Agamous-like MADS-box protein AGL61 | ||||
TrEMBL | A0A1U8HVP0 | 1e-161 | A0A1U8HVP0_GOSHI; agamous-like MADS-box protein AGL61 | ||||
STRING | Gorai.006G127800.1 | 1e-151 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 9e-52 | AGAMOUS-like 61 |
Publications ? help Back to Top | |||
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