PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A09G0518
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 227aa    MW: 25720.1 Da    PI: 9.8727
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A09G0518genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.45.4e-20149183135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C++Cg+ kTp+WR gp g+ktLCnaCG++y++ +l
  Gh_A09G0518 149 CQHCGADKTPQWRAGPLGPKTLCNACGVRYKSGRL 183
                  *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.492143179IPR000679Zinc finger, GATA-type
SMARTSM004011.0E-15143193IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.19E-15145206No hitNo description
Gene3DG3DSA:3.30.50.107.9E-15147181IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.32E-14148196No hitNo description
PfamPF003201.3E-17149183IPR000679Zinc finger, GATA-type
PROSITE patternPS003440149174IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MEALDMAACF EDNLLDFASD VGEEDEDKEH NKKSSTSSSL NPNNSCFSEF AEEELEWLSN  60
KDAFPAVETS FVDVLGTATK HQSSLTLANG NVVMYCFGNV KIPVKARSKR LRKCRDLRDH  120
EKNWRVHKNV KTSNATAKGN RWRTMGRKCQ HCGADKTPQW RAGPLGPKTL CNACGVRYKS  180
GRLVPEYRPA SSPTFSSRLH SNSHRKILEM RRHKQLGFPS MKPMDKR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in roots. Also expressed in stems, flowers and leaves. {ECO:0000269|PubMed:12139008}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016668497.11e-171PREDICTED: GATA transcription factor 1-like
SwissprotQ8LAU97e-45GATA1_ARATH; GATA transcription factor 1
TrEMBLA0A1U8HR261e-170A0A1U8HR26_GOSHI; GATA transcription factor 1-like
STRINGGorai.006G054800.11e-152(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM129872430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.15e-47GATA transcription factor 1