PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A08G2455

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 684aa MW: 75831.1 Da PI: 8.9887

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A08G2455	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.7	8.8e-05	77	98	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC +C++ F ++ n++rHir+H Gh_A08G2455 77 KCDKCSREFCSPINYRRHIRVH 98 7********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.0098	76	98	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.118	76	103	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	78	99	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 684 aa Download sequence Send to blast
MPVAKLKATS SADVMKSEEP NDSLDTFIRQ AIGKEPLLSF SRAGDSSVQW IQLLHALDQQ 60 EIPGWPLLTP LKVQMQKCDK CSREFCSPIN YRRHIRVHHR LKKLDKDSAK NRDLLAAFWG 120 KLSEDEAKEV VSFKDVALEE VPGSSVIKSL TTLVKRPGFS ALPQVCLRAG SALLDLVQAR 180 PSRFPISSQE LFSILDDASE GTFLCGAAVS MQKYIFDGEA GKIGLDTKNL VACTSFLVEQ 240 KLVKAWLAAK DAEALRCQKL LVEEEEAAHK RQVELLERKR QKKLRQKEQK AKELRPWEME 300 EGKQNMDDSL EDSTPAVTSS PKAVFDIDGQ NAVISTDQVL PALEPIPFPN PEEGVDYRVQ 360 TEFYNRYCEP GTSQNGEKRV EQVDGCQRKV VARWKTPPKS QRVVLNGFHA NQNSHGFKSG 420 GTNKHGTNRE RIAAMGNSNK MWSRKPKAID DGDSLQIKAG KQATNQPDQN KNPELIIGSI 480 SVPLGKNLGE THDRCPAECQ PKNNVQERFS KHDHVQIVAN RSTIKFWRPV SRQERKSSLP 540 VQNGIRDVEV EVIAENDGVQ ISSNESYRRS SAVDGSDGVL RMNLSSTLKE SVQPGGLQFD 600 SNAAKAFLAE RWKEAVAGEH VTLVLSSNPK PPGCSGVEID SSEKWMVKAG ACEASTVGAA 660 IAKYRTKPEK GAKTKYIPKQ RSAT

Sequence ? help Back to Top

Protein Sequence Length: 684 aa Download sequence Send to blast

MPVAKLKATS SADVMKSEEP NDSLDTFIRQ AIGKEPLLSF SRAGDSSVQW IQLLHALDQQ  60
EIPGWPLLTP LKVQMQKCDK CSREFCSPIN YRRHIRVHHR LKKLDKDSAK NRDLLAAFWG  120
KLSEDEAKEV VSFKDVALEE VPGSSVIKSL TTLVKRPGFS ALPQVCLRAG SALLDLVQAR  180
PSRFPISSQE LFSILDDASE GTFLCGAAVS MQKYIFDGEA GKIGLDTKNL VACTSFLVEQ  240
KLVKAWLAAK DAEALRCQKL LVEEEEAAHK RQVELLERKR QKKLRQKEQK AKELRPWEME  300
EGKQNMDDSL EDSTPAVTSS PKAVFDIDGQ NAVISTDQVL PALEPIPFPN PEEGVDYRVQ  360
TEFYNRYCEP GTSQNGEKRV EQVDGCQRKV VARWKTPPKS QRVVLNGFHA NQNSHGFKSG  420
GTNKHGTNRE RIAAMGNSNK MWSRKPKAID DGDSLQIKAG KQATNQPDQN KNPELIIGSI  480
SVPLGKNLGE THDRCPAECQ PKNNVQERFS KHDHVQIVAN RSTIKFWRPV SRQERKSSLP  540
VQNGIRDVEV EVIAENDGVQ ISSNESYRRS SAVDGSDGVL RMNLSSTLKE SVQPGGLQFD  600
SNAAKAFLAE RWKEAVAGEH VTLVLSSNPK PPGCSGVEID SSEKWMVKAG ACEASTVGAA  660
IAKYRTKPEK GAKTKYIPKQ RSAT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	276	283	ERKRQKKL

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX588104	2e-52	JX588104.1 Gossypium hirsutum clone NBRI_GE22433 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016739137.1	0.0	PREDICTED: uncharacterized protein LOC107948966 isoform X1
TrEMBL	A0A1U8NJ72	0.0	A0A1U8NJ72_GOSHI; uncharacterized protein LOC107948966 isoform X1
STRING	Gorai.004G117900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5680	25	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-158	C2H2-like zinc finger protein