PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A08G2185

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HRT-like

Protein Properties

Length: 492aa MW: 54940.4 Da PI: 9.8906

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A08G2185	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	51.6	1.5e-16	262	290	2	30
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGmR 30 CGv l+dGs+Ckr+ v+gRKRC+eHKG++ Gh_A08G2185 262 CGVVLDDGSICKRPLVEGRKRCAEHKGKK 290 ***************************98 PP
2	HRT-like	57	3.2e-18	318	348	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+++dGs C+rqPv gRKRC HKG+Ri Gh_A08G2185 318 ICGVAMDDGSLCRRQPVSGRKRCDLHKGRRI 348 8*****************************7 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000033	Biological Process	regulation of seed dormancy process
GO:0097100	Molecular Function	supercoiled DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 492 aa Download sequence Send to blast
MGAAKLADVV TRFNREDHKR TKHDSQFSKW KVLIGPHDWE DHSVGKEGVA RYRVENLPKT 60 ASSGLYELAI NKPSSRDHNG KLDSDKVLVV YLGEADNVRS RLQQYGRTGA HLGRNDSGIN 120 KVCGCFEDIF ARGYSIVYRW APMKNKADAR RTEAQLLGTF DYAWNKGSNG IRRHDDILQK 180 LDKHASNIMK LANFSKKHLP FLQKQVGIKI KAGKLVSDNN EFGKYKNGEN RNFLLQVFNF 240 SRSRPRLVSN HGGSDENETF SCGVVLDDGS ICKRPLVEGR KRCAEHKGKK TRGSSTRSST 300 KSQPHKEDYP EIEHCSPICG VAMDDGSLCR RQPVSGRKRC DLHKGRRIYS SDSEITRYQT 360 MPYAVFNSYS DEKASVFDEN HTGMKITTLV SGLDETSPSH VFDSNSSLNS NNCSTPICGV 420 PTCNGTPCKR TVNGNGRCWQ HLKYSGSRSS SNDFAPRNSN NDSTGTSICG APTRNGSSCR 480 RTVKGNGRCW QH

Sequence ? help Back to Top

Protein Sequence Length: 492 aa Download sequence Send to blast

MGAAKLADVV TRFNREDHKR TKHDSQFSKW KVLIGPHDWE DHSVGKEGVA RYRVENLPKT  60
ASSGLYELAI NKPSSRDHNG KLDSDKVLVV YLGEADNVRS RLQQYGRTGA HLGRNDSGIN  120
KVCGCFEDIF ARGYSIVYRW APMKNKADAR RTEAQLLGTF DYAWNKGSNG IRRHDDILQK  180
LDKHASNIMK LANFSKKHLP FLQKQVGIKI KAGKLVSDNN EFGKYKNGEN RNFLLQVFNF  240
SRSRPRLVSN HGGSDENETF SCGVVLDDGS ICKRPLVEGR KRCAEHKGKK TRGSSTRSST  300
KSQPHKEDYP EIEHCSPICG VAMDDGSLCR RQPVSGRKRC DLHKGRRIYS SDSEITRYQT  360
MPYAVFNSYS DEKASVFDEN HTGMKITTLV SGLDETSPSH VFDSNSSLNS NNCSTPICGV  420
PTCNGTPCKR TVNGNGRCWQ HLKYSGSRSS SNDFAPRNSN NDSTGTSICG APTRNGSSCR  480
RTVKGNGRCW QH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017623554.1	0.0	PREDICTED: protein EFFECTOR OF TRANSCRIPTION 2-like
TrEMBL	A0A2P5WBE4	0.0	A0A2P5WBE4_GOSBA; Uncharacterized protein
STRING	EOY30505	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2954	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	1e-101	effector of transcription2