PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A08G2184

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HRT-like

Protein Properties

Length: 449aa MW: 50314.5 Da PI: 9.2351

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A08G2184	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	58.2	1.4e-18	248	276	2	30
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGmR 30 CGv l+dGs+Ckr+Pv+gRKRC+eHKG++ Gh_A08G2184 248 CGVVLDDGSICKRPPVEGRKRCAEHKGKK 276 ***************************98 PP
2	HRT-like	57.2	2.8e-18	304	334	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+++dGs C+rqPv gRKRC HKG+Ri Gh_A08G2184 304 ICGVAMDDGSLCRRQPVSGRKRCDLHKGRRI 334 8*****************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50164	10.405	68	162	IPR000305	GIY-YIG nuclease superfamily
SMART	SM00465	0.0022	69	166	IPR000305	GIY-YIG nuclease superfamily

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence Send to blast
MVLIVEEEEI PIELLAVHVD RLKREDHKKT DHDSDFSKWK LLICPHDWEN GKGGAVTRYR 60 SENLPKSSGP GTYELAVSRD RHGKLEPDLV VYVGAAENIR ARLQQYGRDG THLCRKDKGC 120 PLFDIFARGC SIVYRWVPRE NKADALRTEA QLLGTYDYPW NKGSNGIRRH DDILQKLDKH 180 ASNPKKLNQK QVGIKIKASK LASDDSEFGK YKNGENLNFL PQVFNFSRSR PRLVSNHGGS 240 DKNETFSCGV VLDDGSICKR PPVEGRKRCA EHKGKKTTGA STSSSMKSQP HKEDYPEIEH 300 CSPICGVAMD DGSLCRRQPV SGRKRCDLHK GRRIYSSGSE ITSYETMPYA IFNPYSDEKD 360 SNSSLNSNNC STPICGVLTC NGTPYKRTVN GNGRCWQHLK YSGSHSSSNY FIPRISNYDS 420 TGTSICGAPT RNGSFCRRTV KGNGTCRQH

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence Send to blast

MVLIVEEEEI PIELLAVHVD RLKREDHKKT DHDSDFSKWK LLICPHDWEN GKGGAVTRYR  60
SENLPKSSGP GTYELAVSRD RHGKLEPDLV VYVGAAENIR ARLQQYGRDG THLCRKDKGC  120
PLFDIFARGC SIVYRWVPRE NKADALRTEA QLLGTYDYPW NKGSNGIRRH DDILQKLDKH  180
ASNPKKLNQK QVGIKIKASK LASDDSEFGK YKNGENLNFL PQVFNFSRSR PRLVSNHGGS  240
DKNETFSCGV VLDDGSICKR PPVEGRKRCA EHKGKKTTGA STSSSMKSQP HKEDYPEIEH  300
CSPICGVAMD DGSLCRRQPV SGRKRCDLHK GRRIYSSGSE ITSYETMPYA IFNPYSDEKD  360
SNSSLNSNNC STPICGVLTC NGTPYKRTVN GNGRCWQHLK YSGSHSSSNY FIPRISNYDS  420
TGTSICGAPT RNGSFCRRTV KGNGTCRQH

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.25280	4e-96	boll

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016729123.1	0.0	PREDICTED: uncharacterized protein LOC107940200
TrEMBL	A0A1U8MU96	0.0	A0A1U8MU96_GOSHI; uncharacterized protein LOC107940200
STRING	EOY30505	1e-155	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2954	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	1e-80	effector of transcription2