PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A08G1674
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 425aa    MW: 45366.2 Da    PI: 5.9202
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A08G1674genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_147.15e-15213267357
                  XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                  + kr+rr+ +NRe+ArrsR+RK+a++ eLe+ v +L ae ++L ++l  ++ +++
  Gh_A08G1674 213 DAKRARRMRSNRESARRSRRRKQAQMNELETQVGQLRAEHSSLLERLTDMNHKYD 267
                  68***************************************99977776666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.4E-11210265No hitNo description
SMARTSM003381.8E-17211275IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.289213268IPR004827Basic-leucine zipper domain
PfamPF001701.3E-12214267IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.0E-10215265No hitNo description
PROSITE patternPS000360218233IPR004827Basic-leucine zipper domain
PfamPF124984.1E-18282390IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MNSVFSVDDF SDPFWAASAT GAAAGMSRSQ SEWALEKFLE EFSGAGAAIQ GSRAGENVIG  60
TSLAVPQAPV SKSENGDGDG GAVEVKKPNN LNRPPSDSTP TVPIDADEYR AILKNKLHQA  120
CAAVALSRAS VVKAEGSSAQ AENQALQSGS DVRGSSKTQE QGEPDAGISA VSTTQKKPGT  180
QMRQATSGSS REDSDDGELE GDTETTENMD PADAKRARRM RSNRESARRS RRRKQAQMNE  240
LETQVGQLRA EHSSLLERLT DMNHKYDEAA VDNRILKADI ETLRAKVKMA EETFKRVTGI  300
NPVLLSRPSV PSVTVPFVSS PLESSTGSLP LPPDTNKLFH QPVPNIAAPI HHPRLDNSFT  360
GNNLVTPIVN PQTEIGVENV NETSALQHTP RGVQKQIGPG VSPCVPMPGW EPGLPHGAAT  420
NNKQS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1227234RRSRRRKQ
2229234SRRRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.96950.0boll| ovule| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First observed in seeds at early stages of development, mostly in embryo and, at lower extent, in the endosperm. Accumulates and peaks at maturation. Fade out during late seed development steps, restricted to the inner layer of the seed coat, and, at very low levels, in the mature embryo and the remaining endosperm. Also present in the lignified inner subepidermal layer of the valves. {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:18841482}.
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, stems, leaves, stipulae, siliques, seeds, pollen, and flowers. {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:18841482}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'-ACGT-3' box, especially present in G-box-like motif (5'-CCACGTGGCC-3'), ABRE elements, of seed storage protein (SSP) encoding gene promoters (e.g. At2S and CRU3) and promotes their expression in seeds when in complex with ABI3 and BZIP53. {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:19261733, ECO:0000269|PubMed:19531597}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016724734.10.0PREDICTED: basic leucine zipper 25-like isoform X2
SwissprotQ9M1G63e-72BZP25_ARATH; Basic leucine zipper 25
TrEMBLA0A1U8MGQ20.0A0A1U8MGQ2_GOSHI; basic leucine zipper 25-like isoform X2
STRINGGorai.004G218300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58482645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54620.13e-58basic leucine zipper 25
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  3. Jain P, et al.
    A-ZIP53, a dominant negative reveals the molecular mechanism of heterodimerization between bZIP53, bZIP10 and bZIP25 involved in Arabidopsis seed maturation.
    Sci Rep, 2017. 7(1): p. 14343
    [PMID:29084982]
  4. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]