PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A08G0027
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 666aa    MW: 72868.6 Da    PI: 8.0173
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A08G0027genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.44.5e-07262282526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C+ +++ G Ck Gd+C +aHg
  Gh_A08G0027 262 PCPEYRK-GSCKQGDNCEYAHG 282
                  8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.202.4E-1515163IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.37E-1335138IPR020683Ankyrin repeat-containing domain
PfamPF127963.3E-755127IPR020683Ankyrin repeat-containing domain
SMARTSM002480.225989IPR002110Ankyrin repeat
PROSITE profilePS5029713.04559134IPR020683Ankyrin repeat-containing domain
CDDcd002044.61E-1361163No hitNo description
PROSITE profilePS5008810.04594129IPR002110Ankyrin repeat
SMARTSM002480.006494126IPR002110Ankyrin repeat
SMARTSM003562.5E-4257283IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-5261283IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-4262282IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.972262284IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.9E-4289320IPR000571Zinc finger, CCCH-type
SMARTSM0035617292315IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.202292316IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
MGKSTQTGGA TQKFSDLLEL SASNDLISFR IAIEEEGHDI DEPSLWYGRR IGTKKMGFEE  60
RTPLLIASIF GCKDVVNYII KSGQVDVNRA CGSDGARALH CAAAGGSSGS PEIVKILLNA  120
CVDINSVDAN GNRPGDLIAP ASCNSDCSSR KKLLEALLKS NVDGGEGFPF RVGNEMDVSE  180
VQVDSIHRVW KDGNEKKEYP YDLTLPDIKN GMYGTDEFRM YTFKIQPCSR AYSHDWTECP  240
FVHPGENARR RDPRKYVYSC VPCPEYRKGS CKQGDNCEYA HGIFESWLHP AQYRTRLCKD  300
ETNCNRRVCF FAHKPEELRP LYASTGSALP SPRSYSGSGL EFGSMSPLAP ASPSVIKPST  360
STPPLTPTGT SSIGGSMWPN QSSIVPPTLQ LPFSRLKAAR TARGKDLNMD KLSLETHRRF  420
QQQQQQLEQS PTSWNNPLSG ELNRFGGVKS TSLDDIFGSL DSTKPQLQGL SLKAASPQLQ  480
SPTAVPKWQN RNQQLRASYP TNLASSPIMM SPTFGVETSG PTAASSLSSK RSPSVIERPA  540
GNRNSGFSTP ASPVGAMPPN LSDWGSVDGK LDWGIQGEEL KKLRKSASLV FLNNSSNLPN  600
TARSLPSTSE EPEASRVQPH MNGSTHSAGQ VRPEDQKQQK CHNTGNSDML SAWMEQLYKD  660
QDQILN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016719304.10.0PREDICTED: zinc finger CCCH domain-containing protein 66-like
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A1U8M1840.0A0A1U8M184_GOSHI; zinc finger CCCH domain-containing protein 66-like
STRINGGorai.004G007300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein