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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Gh_A06G0282 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
C2H2 |
| Protein Properties |
Length: 312aa MW: 35243.5 Da PI: 8.0987 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gh_A06G0282 | genome | NAU-NBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 17.8 | 8.9e-06 | 155 | 174 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20
++C+ C k+F+r nL+ H+
Gh_A06G0282 155 FSCHVCFKTFNRYNNLQMHM 174
89*****************9 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 312 aa
Download sequence Send
to blast |
MLFSFNCIIL QPPYLFSLNI LSIGLGNPII NPFQKLNKNK PTFFLVLFFL MEPSDVSCDS 60
DIVSSTNYHT DMEPLDLFPG AIHESLDPMP LLSYENPKPC SEEDKEDVTV ALHIGLPDPS 120
NDSNTNSSKE NIANGGGKQY WIPTPEQILI GFTNFSCHVC FKTFNRYNNL QMHMWGHGSQ 180
YRKGPESLKG TQPRAMLGIP CYCCAEGCKN NIEHPRAKPL KDFRTLQTHY KRKHGLKPFM 240
CRKCGKFLAV KGDWRTHEKN CGKRWLCVCG SDFKHKRSLK DHIKAFGSGH GPFPPSFDGV 300
EVLEDTASSL HV
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Developing ovules and young seeds. {ECO:0000269|PubMed:11782451}. |
| Uniprot | TISSUE SPECIFICITY: Restricted to the endothelium, the innermost cell layer of the seed coat and detected to a lesser extent in the other cell layers of the testa. {ECO:0000269|PubMed:11782451}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269|PubMed:11782451, ECO:0000269|PubMed:21477081}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | JX580084 | 1e-113 | JX580084.1 Gossypium hirsutum clone NBRI_GE12446 microsatellite sequence. |
