PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A05G3555

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 442aa MW: 49144.4 Da PI: 6.9062

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A05G3555	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	163.6	7e-51	26	151	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 l+pGfrFhPtdeelv++yLk+kv++k++++ ++i+evdiyk+ePwdL kv++++ + fFs dkky +g r nrat++gyWkatgkd+ev + +++ Gh_A05G3555 26 LAPGFRFHPTDEELVSYYLKRKVTNKPVRF-NAIAEVDIYKHEPWDLSVKVENQRPGVVFFSLLDKKYGNGGRMNRATNQGYWKATGKDREVRH-NDQ 121 579**********************999.89**********999988888**********************************.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 l+g+kktLvf++grap+g +t+Wvmheyrl Gh_A05G3555 122 LMGMKKTLVFHNGRAPDGLQTNWVMHEYRL 151 **************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.58E-55	23	174	IPR003441	NAC domain
PROSITE profile	PS51005	51.951	26	173	IPR003441	NAC domain
Pfam	PF02365	1.9E-25	28	151	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence Send to blast
MRGENSLAIV TAPSAAAETG GSATALAPGF RFHPTDEELV SYYLKRKVTN KPVRFNAIAE 60 VDIYKHEPWD LSVKVENQRP GVVFFSLLDK KYGNGGRMNR ATNQGYWKAT GKDREVRHND 120 QLMGMKKTLV FHNGRAPDGL QTNWVMHEYR LVEEELERIG TLQGYVLCRV FHKNNIGPPN 180 GNRYAPFIEA EWDDGSAALV PGIDIGDDGV ASEKALVESN GVQKSVLSRV EIQNADEEAP 240 ANDKVRRELP NERIYDCPPL PPGNSERLDN GPRLCLVNRE APLPLIHYKR RRQNDSGPNH 300 ANISENSTRT TQDHCSSTTT AGTTTASPSS DTTTAVSALL EFSLMESIEP KKKKPHVPPP 360 IYETANLDSM VPPGCMKLIT DLQNEIRKIS AEREMLKLEM MSAQAMINIL QSKVDFLSKE 420 NEDLKRNNRE LRGGSVGSCS HP

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence Send to blast

MRGENSLAIV TAPSAAAETG GSATALAPGF RFHPTDEELV SYYLKRKVTN KPVRFNAIAE  60
VDIYKHEPWD LSVKVENQRP GVVFFSLLDK KYGNGGRMNR ATNQGYWKAT GKDREVRHND  120
QLMGMKKTLV FHNGRAPDGL QTNWVMHEYR LVEEELERIG TLQGYVLCRV FHKNNIGPPN  180
GNRYAPFIEA EWDDGSAALV PGIDIGDDGV ASEKALVESN GVQKSVLSRV EIQNADEEAP  240
ANDKVRRELP NERIYDCPPL PPGNSERLDN GPRLCLVNRE APLPLIHYKR RRQNDSGPNH  300
ANISENSTRT TQDHCSSTTT AGTTTASPSS DTTTAVSALL EFSLMESIEP KKKKPHVPPP  360
IYETANLDSM VPPGCMKLIT DLQNEIRKIS AEREMLKLEM MSAQAMINIL QSKVDFLSKE  420
NEDLKRNNRE LRGGSVGSCS HP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-42	25	175	16	167	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-42	25	175	16	167	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-42	25	175	16	167	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-42	25	175	16	167	NO APICAL MERISTEM PROTEIN
3swm_A	6e-42	25	175	19	170	NAC domain-containing protein 19
3swm_B	6e-42	25	175	19	170	NAC domain-containing protein 19
3swm_C	6e-42	25	175	19	170	NAC domain-containing protein 19
3swm_D	6e-42	25	175	19	170	NAC domain-containing protein 19
3swp_A	6e-42	25	175	19	170	NAC domain-containing protein 19
3swp_B	6e-42	25	175	19	170	NAC domain-containing protein 19
3swp_C	6e-42	25	175	19	170	NAC domain-containing protein 19
3swp_D	6e-42	25	175	19	170	NAC domain-containing protein 19
4dul_A	6e-42	25	175	16	167	NAC domain-containing protein 19
4dul_B	6e-42	25	175	16	167	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.2030	0.0	ovule

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Mostly expressed in floral organs, and, at low levels, in other organs. {ECO:0000269\|PubMed:25578968}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC050 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). Regulates siRNA-dependent post-transcriptional gene silencing (PTGS) through SGS3 expression modulation (PubMed:28207953). Required during pollen development (PubMed:19237690). {ECO:0000269\|PubMed:19237690, ECO:0000269\|PubMed:24045019, ECO:0000269\|PubMed:25578968, ECO:0000269\|PubMed:26617990, ECO:0000269\|PubMed:28207953}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by type III effector proteins (TTEs) secreted by the pathogenic bacteria P.syringae pv. tomato DC3000 during basal defense. {ECO:0000269\|PubMed:16553893}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC847246	0.0	KC847246.1 Gossypium hirsutum NAC domain protein NAC69 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017615663.1	0.0	PREDICTED: uncharacterized protein LOC108460613
Swissprot	Q9SQY0	1e-141	NAC52_ARATH; NAC domain containing protein 52
TrEMBL	A0A0B0PRN1	0.0	A0A0B0PRN1_GOSAR; NAC domain-containing 78-like protein
STRING	Gorai.012G007000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1780	28	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10480.2	1e-127	NAC domain containing protein 50

Publications ? help Back to Top
Higgins JD,Ferdous M,Osman K,Franklin FC The RecQ helicase AtRECQ4A is required to remove inter-chromosomal telomeric connections that arise during meiotic recombination in Arabidopsis. Plant J., 2011. 65(3): p. 492-502 [PMID:21265901] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang S, et al. C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association. Cell Discov, 2019. [PMID:26617990] Butel N,Le Masson I,Bouteiller N,Vaucheret H,Elmayan T sgs1: a neomorphic nac52 allele impairing post-transcriptional gene silencing through SGS3 downregulation. Plant J., 2017. 90(3): p. 505-519 [PMID:28207953] Elmayan T, et al. Arabidopsis mutants impaired in cosuppression. Plant Cell, 1998. 10(10): p. 1747-58 [PMID:9761800]