PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A03G1611
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 272aa    MW: 29112.1 Da    PI: 7.7624
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A03G1611genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.00032108130123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ykC+ C+k F++   L  H  +H
  Gh_A03G1611 108 YKCSVCNKAFPSYQALGGHKASH 130
                  9***********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0057108130IPR015880Zinc finger, C2H2-like
SuperFamilySSF576679.95E-10108130No hitNo description
PROSITE profilePS5015710.325108135IPR007087Zinc finger, C2H2
PfamPF139126.9E-14108132IPR007087Zinc finger, C2H2
PROSITE patternPS000280110130IPR007087Zinc finger, C2H2
SuperFamilySSF576679.95E-10157184No hitNo description
PfamPF139125.9E-13161186IPR007087Zinc finger, C2H2
SMARTSM003550.13162184IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.432162184IPR007087Zinc finger, C2H2
PROSITE patternPS000280164184IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MALEALKSPT MATAPYSNKY EDIDNNYVDT WKKGKRSKRQ RDDESSSSPP PPPPPPPTNE  60
EEYLALCLIM LARGGSTTEN AVTDGGNDDH RMSSSSSAPA PAALKLSYKC SVCNKAFPSY  120
QALGGHKASH RKSSTDAKPD NQSITTNSTT ASGETGGNGK AHKCSICHKS FPTGQALGGH  180
KRCHYEGGNT TTTTNNNNKS SSVSLSGVTV SDGGALSQTR CVDFDFDLNL PALCELENKD  240
GSRFSQIYTE QEVESPLPTK KPRFMTASLA QH
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.19990.0boll| embryo| ovule| stem
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM0026320.0HM002632.1 Gossypium hirsutum C2H2 zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001313935.10.0zinc finger protein ZAT10-like
TrEMBLV9I0K00.0V9I0K0_GOSHI; C2H2 zinc finger protein
STRINGGorai.005G232300.11e-160(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12112898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.17e-47salt tolerance zinc finger