PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A03G1021

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 563aa MW: 60682 Da PI: 8.8824

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A03G1021	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00027	132	154	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ Gh_A03G1021 132 WKCEKCSKRYAVQSDWKAHSKTC 154 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	2.0E-5	120	153	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding

Sequence ? help Back to Top
Protein Sequence Length: 563 aa Download sequence Send to blast
MAAASSSKPF FGTREENQNQ MMQEQSSIAT PTSSTAPTTA PQKRKRNHPG TSCKSRCGSD 60 STISQDSNGN KQLHRRGHNL PWKLRQKTTK EVKRKVYLCP EPTCVHHDPS KALGDLTGIK 120 KHYSRKHGEK KWKCEKCSKR YAVQSDWKAH SKTCGTREYR CDCGTLFSRR DSFITHRAFC 180 DALAQESARH PTNLSTMGSH HLFGDNHHMS LGLSHVRSQI PPLQDQNQVQ PSSNLLRLGS 240 TSGAVKFDHL ISPSNHFSLQ NMPSSMFFMA EAANQGFHQD HQSHHGHGSY PNKPLHGLMQ 300 LPDLQGSTNN SPTSANFFNL GFFSNTSATS SISTSEIGGG QGPALFPSNM GDQVGSGMSS 360 LYTTSMQHEN ISPHMSATAL LQKAAQIGST TSNNTTSTLL RGLGSSLSGA TKSDRPVFSP 420 NFGSNFEGGN GSETLRSNME DDSNLQGLMN SLAANGNSSI FDGGPSHGQD NNFGGFNGSG 480 LTLESQSSNA NFCNVNEAKL HQNLAAGIGG TDKLTLDFLG VGGMIGNISG GFSQREQQGI 540 NISSLEPDMK SSAQPNTEHF GRA

Sequence ? help Back to Top

Protein Sequence Length: 563 aa Download sequence Send to blast

MAAASSSKPF FGTREENQNQ MMQEQSSIAT PTSSTAPTTA PQKRKRNHPG TSCKSRCGSD  60
STISQDSNGN KQLHRRGHNL PWKLRQKTTK EVKRKVYLCP EPTCVHHDPS KALGDLTGIK  120
KHYSRKHGEK KWKCEKCSKR YAVQSDWKAH SKTCGTREYR CDCGTLFSRR DSFITHRAFC  180
DALAQESARH PTNLSTMGSH HLFGDNHHMS LGLSHVRSQI PPLQDQNQVQ PSSNLLRLGS  240
TSGAVKFDHL ISPSNHFSLQ NMPSSMFFMA EAANQGFHQD HQSHHGHGSY PNKPLHGLMQ  300
LPDLQGSTNN SPTSANFFNL GFFSNTSATS SISTSEIGGG QGPALFPSNM GDQVGSGMSS  360
LYTTSMQHEN ISPHMSATAL LQKAAQIGST TSNNTTSTLL RGLGSSLSGA TKSDRPVFSP  420
NFGSNFEGGN GSETLRSNME DDSNLQGLMN SLAANGNSSI FDGGPSHGQD NNFGGFNGSG  480
LTLESQSSNA NFCNVNEAKL HQNLAAGIGG TDKLTLDFLG VGGMIGNISG GFSQREQQGI  540
NISSLEPDMK SSAQPNTEHF GRA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-35	128	189	3	64	Zinc finger protein JACKDAW
5b3h_F	2e-35	128	189	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.4693	0.0	ovule

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016665718.1	0.0	PREDICTED: protein indeterminate-domain 5, chloroplastic-like
Refseq	XP_016665719.1	0.0	PREDICTED: protein indeterminate-domain 5, chloroplastic-like
TrEMBL	A0A1U8HP15	0.0	A0A1U8HP15_GOSHI; protein indeterminate-domain 5, chloroplastic-like
STRING	Gorai.005G158200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4373	26	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	4e-88	indeterminate(ID)-domain 5