PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A01G1252
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WOX
Protein Properties Length: 291aa    MW: 33220.1 Da    PI: 6.1768
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A01G1252genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox68.49.3e-2265124357
                  --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                  +R+++t+eql +Leel++  +r+psa++++++A++l    +++ ++V++WFqN++a+e++
  Gh_A01G1252  65 SRWNPTPEQLLTLEELYRLgTRTPSAAQIQQIATRLrrfgKIEGKNVFYWFQNHKARERQ 124
                  7*****************88**************************************97 PP
2Wus_type_Homeobox111.54.4e-3664126365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++RW+PtpeQ+  Leely+ G+rtP++++iq+i+++L+++Gkie+kNVfyWFQN+kaRerqk+
        Gh_A01G1252  64 SSRWNPTPEQLLTLEELYRLGTRTPSAAQIQQIATRLRRFGKIEGKNVFYWFQNHKARERQKR 126
                        68***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.12760125IPR001356Homeobox domain
SMARTSM003895.2E-562129IPR001356Homeobox domain
SuperFamilySSF466892.35E-1263128IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.6E-965124IPR009057Homeodomain-like
PfamPF000462.2E-1965124IPR001356Homeobox domain
CDDcd000861.00E-566126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MGYPHITDLN LSHSFNIAKP SPLDPNPTNT TNLLALNHGD LASNANEVSH TTELNSQQQQ  60
PLGSSRWNPT PEQLLTLEEL YRLGTRTPSA AQIQQIATRL RRFGKIEGKN VFYWFQNHKA  120
RERQKRRRQL KTEEEQQQCD TESLEKKESV FSLPVGCCEI KPTNKGSPSN VRKFSEEFIW  180
THGFPKSEGN EWMEIEEKEL RMELCCTPID LTNTTTTASL DTQKNLCSFK PHQEKITTLE  240
DANREDQTLE LFPLGSNDGN GINISNKDTQ GPIRTISTTP NQYFEFLPLK N
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016728470.10.0PREDICTED: WUSCHEL-related homeobox 3
TrEMBLA0A1U8MNU60.0A0A1U8MNU6_GOSHI; WUSCHEL-related homeobox 3
STRINGGorai.002G178400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1804879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.13e-29WUSCHEL related homeobox 1