PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A01G0064
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 435aa    MW: 49712.4 Da    PI: 8.6729
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A01G0064genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.82.2e-1989178299
                  EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  +k ++ps+v+   +l lpk+f+ +h  +k e+++++lede+g++++vk+ ++k +    l++GW+ F  a++L egD++vF+l++ s+f  +v ++rk
  Gh_A01G0064  89 IKYMLPSHVTGGFWLGLPKHFCLNHL-PK-EDRMMVLEDEEGKEFQVKYLVEKIG----LSGGWRAFSIAHKLLEGDVCVFHLVRPSKF--KVYIVRK 178
                  57899*****************9884.33.5679***************555555....************************998999..8888886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-2281180IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-2583182IPR015300DNA-binding pseudobarrel domain
CDDcd100171.63E-2686177No hitNo description
SMARTSM010193.0E-2188179IPR003340B3 DNA binding domain
PROSITE profilePS5086313.18388179IPR003340B3 DNA binding domain
PfamPF023622.8E-1789178IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MAVSPKQRIS SLKVSRGRGR PPKTKLFRKK LSAMTVNQIV SYEKEKAQCN KRKRAKYDEV  60
YENGETKLAV MERALDIQAN LSSEFPSMIK YMLPSHVTGG FWLGLPKHFC LNHLPKEDRM  120
MVLEDEEGKE FQVKYLVEKI GLSGGWRAFS IAHKLLEGDV CVFHLVRPSK FKVYIVRKKC  180
SEEVDVALGL LKLESSTQLV DNGKELKICE ISVGKTEDRN DPILYSSNLE PTVDQSKNNR  240
VDLGSEVSDG IRLSESIVDF REVKSFEDFN ILVNGLVIDF EFSKYLQMKY YELCCNQNSF  300
LHENLLEGLN CKLVAGVIAE TINIADAIRA AKLTTPHDSF LTWDKTLRSF EGLGMKVGFL  360
RARLDKLMNL LTKSRRYKEA KLEQANSNEE KLKLEAKLAE VTHTLTKLDR EIRLFKQENA  420
DDLEALFREV ANGPW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016721964.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like
TrEMBLA0A1U8M8V60.0A0A1U8M8V6_GOSHI; B3 domain-containing protein Os01g0234100-like
STRINGGorai.002G007600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16718911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-41B3 family protein