PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01037363001
Common NameVIT_06s0009g02470
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C2H2
Protein Properties Length: 297aa    MW: 31878.2 Da    PI: 7.6758
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01037363001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.00085111129321
                        ETTTTEEESSHHHHHHHHH CS
            zf-C2H2   3 CpdCgksFsrksnLkrHir 21 
                        Cp C+ksF++k     H+r
  GSVIVT01037363001 111 CPVCSKSFRSKKAVYGHMR 129
                        *****************98 PP
2zf-C2H213.10.00028235257123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC++C+k F++   L  H r H
  GSVIVT01037363001 235 FKCNICSKNFRSGQALGGHKRAH 257
                        89**********99999999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.094109131IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.016109136IPR007087Zinc finger, C2H2
SuperFamilySSF576671.06E-7110131No hitNo description
PfamPF139121.4E-5111133IPR007087Zinc finger, C2H2
PROSITE patternPS000280111131IPR007087Zinc finger, C2H2
SuperFamilySSF576671.06E-7180207No hitNo description
PfamPF139121.7E-10185208IPR007087Zinc finger, C2H2
PROSITE profilePS501579.307185212IPR007087Zinc finger, C2H2
SMARTSM003550.28185207IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280187207IPR007087Zinc finger, C2H2
PfamPF139124.7E-10235257IPR007087Zinc finger, C2H2
SuperFamilySSF576671.8E-5235259No hitNo description
PROSITE profilePS5015710.596235257IPR007087Zinc finger, C2H2
SMARTSM003550.21235257IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280237257IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MADDVSCEGQ EGQNLAPGGS PEEGHSLNLI KIQTGGGEED YDTGKRRAVI MKTEVVCSSN  60
SEGLRCSKAF KIQTRALLDE QDSDKNKTSN LKNDGSEGGV SEKNTGSEAL CPVCSKSFRS  120
KKAVYGHMRC HPDREWRGIN PPPSAKSDSC STESGSKNTT DRSKNGNKLD QKIVSESPLV  180
APREHKCSTC HKVFPTFQAL GGHRSSHSYK NNLQAMDAGE EESKEGSSKV VVDGFKCNIC  240
SKNFRSGQAL GGHKRAHFQG STQATPTQDS ASGKASESMG NKVLGFDLNE LPRMDE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4693490.0AM469349.1 Vitis vinifera contig VV78X097754.15, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019075995.11e-100PREDICTED: uncharacterized protein LOC104879681
TrEMBLA0A438I8111e-104A0A438I811_VITVI; Zinc finger protein AZF3
TrEMBLF6HAD21e-104F6HAD2_VITVI; Uncharacterized protein
STRINGVIT_06s0009g02470.t011e-105(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.11e-24C2H2-like zinc finger protein