PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01035557001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bZIP
Protein Properties Length: 420aa    MW: 45936.8 Da    PI: 6.9853
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01035557001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1482.8e-15249301358
                        XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                         lkr rr+ +NRe+ArrsR+RK+a ++ Le  v++L +eN +L k+   l++ +++
  GSVIVT01035557001 249 NLKRMRRMVSNRESARRSRKRKQAHLADLELQVEQLRGENASLYKQ---LTDASQQ 301
                        58***************************************99955...5554444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.2E-12243302No hitNo description
SMARTSM003381.6E-13247311IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.116249301IPR004827Basic-leucine zipper domain
PfamPF001701.4E-12249297IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.25E-12251300No hitNo description
CDDcd147022.06E-22252302No hitNo description
PROSITE patternPS000360254269IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MKILFKIIVK PTLKIAILYL VRTVLSLLRV YNSISLLTCP PFSLPLFSNS HYFLPSSLRN  60
LRSPEPPPPP MDHKPLRHDV VSHQSTTDSM KRSNSELDFQ EFVRLPISPV AVDNGAPTSK  120
PEIRSPKART FPEPVVLFGV DEDKTFEDVC AGDFSFALKY GDAMTGFSGC GGLTDLPWYQ  180
NPTPRNSSVT ATIDSQSSIC VGTPTSCNKA LGTENQARGA TSGSSRELSD DEDIDTESGP  240
CEESTDPNNL KRMRRMVSNR ESARRSRKRK QAHLADLELQ VEQLRGENAS LYKQLTDASQ  300
QFGDANTNNR VLKSDVEALR AKVELVEGMV ARGSVTSSLN HILQTHLSSP QLLSTHNLCR  360
VANVSPTITV RGDDASYSGM TISGHNSAAL GLENAEIRNS EIKNRVMSDG VSCASEIWP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1263269RRSRKRK
2263270RRSRKRKQ
3265270SRKRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.66160.0bud| cell culture| fruit| inflorescence| leaf| pedicel
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Present in silique vasculature and funiculi. In the anthers, restricted to the connective tissue at pre- and post-dehiscence stages and detected in the vascular tissue of the stamen filament. {ECO:0000269|PubMed:18841482}.
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, stems, young leaves, and flowers, mostly in vascular tissues (e.g. phloem). {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:18841482}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by glucose. {ECO:0000269|PubMed:18841482}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4750730.0AM475073.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X115722.8, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002283059.20.0PREDICTED: basic leucine zipper 9
SwissprotQ9FUD36e-69BZIP9_ARATH; Basic leucine zipper 9
TrEMBLF6H3C40.0F6H3C4_VITVI; Uncharacterized protein
STRINGVIT_04s0008g02750.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP69561017
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.11e-71basic leucine zipper 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ortiz-Espín A, et al.
    Mitochondrial AtTrxo1 is transcriptionally regulated by AtbZIP9 and AtAZF2 and affects seed germination under saline conditions.
    J. Exp. Bot., 2017. 68(5): p. 1025-1038
    [PMID:28184497]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  4. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]