PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01033811001
Common NameLOC100257875, VIT_08s0007g03640
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bZIP
Protein Properties Length: 497aa    MW: 55605.6 Da    PI: 9.3204
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01033811001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_127.38e-09162225164
                        XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
             bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkseve 64 
                        eke +r rr   NRe+Ar   +R++a + eL +k++ L+ eN++Lk e e   ke ++l+++++
  GSVIVT01033811001 162 EKEARRLRRVLANRESARQTIRRRQALCGELSRKAADLSLENETLKREKELAMKEFQSLENKNK 225
                        799*********************************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF001701.5E-7162225IPR004827Basic-leucine zipper domain
SMARTSM003385.1E-10162226IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.657164227IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.73E-5166219No hitNo description
Gene3DG3DSA:1.20.5.1704.6E-5166231No hitNo description
CDDcd147025.17E-13167218No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MDEERHSGSN YSSSLSSSRP RSSAAASRFN IKGADRLVKI ELEAAEVLAD LAQSLMRESE  60
SNGAESGGKW GSKGKRGRKR VKSESPPSDE FKNPDNLFPG SSDLTEQDKQ SVVQQECRKI  120
DRNVFLTKTE TDDEFAKPSP MCTTTYAPHH SGKLRQNLTE AEKEARRLRR VLANRESARQ  180
TIRRRQALCG ELSRKAADLS LENETLKREK ELAMKEFQSL ENKNKHLKAQ VAKIIKPEEE  240
KTPESISSHE MTSIPPSSNC PLLLYNQPSF TPFLWSSPER RFQNAFASHA VPDERENPNI  300
DAYRTPLYIL PCPWFFPLPN HGNGLHLPPS LNLKDKQDAV NSQCSASSLI KNKSGIETKP  360
ANKFQEASFE FLPDGHLITP HHRRMIPANN VHDLSYGFSP DAHHISSHSN AMILSPSPLM  420
SLKSAITFKH EGELQSSYVD NGEGGHIVSV FSEKNQEPVI CSSKRLVDAV AAAEARKRRK  480
ELTKLKNLHG RVRMHC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1475480RKRRKE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.20970.0fruit| inflorescence
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4570390.0AM457039.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X268410.8, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002277087.10.0PREDICTED: uncharacterized protein LOC100257875 isoform X2
TrEMBLD7TJ430.0D7TJ43_VITVI; Uncharacterized protein
STRINGVIT_08s0007g03640.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP45691318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19490.19e-37bZIP family protein