PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01033321001
Common NameLOC100852566, VIT_08s0007g08160
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB_related
Protein Properties Length: 775aa    MW: 86484.6 Da    PI: 5.6112
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01033321001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.86.7e-10711765146
                        TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqk 46 
                        +++WT+ E+e+l+ +v+++ ++      Wk+I++  g     gRt  ++k++w++
  GSVIVT01033321001 711 KLAWTAKEEEILKVGVQKFSNDhdksiPWKKIMEFGGtvfqRGRTTIDLKDKWRN 765
                        689***************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.59E-8503555IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.103.6E-8504555IPR013083Zinc finger, RING/FYVE/PHD-type
SMARTSM002494.1E-6507552IPR001965Zinc finger, PHD-type
PROSITE patternPS013590508551IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.602.3E-9706770IPR009057Homeodomain-like
PROSITE profilePS500906.888706767IPR017877Myb-like domain
SuperFamilySSF466895.3E-9708768IPR009057Homeodomain-like
SMARTSM007177.1E-5710769IPR001005SANT/Myb domain
PfamPF002491.3E-5712765IPR001005SANT/Myb domain
CDDcd116609.75E-11714768No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 775 aa     Download sequence    Send to blast
MAEKSCSVSS LPWLWVMETL ASFERVDISL LKDLMIKAPE VSDNLGRNVK EMIALRCLEA  60
LFSGITNDVH PVVHSKMGFD PSESCEDVLQ CILRKVSASK LRMGEPELLK WNVNPFIAHK  120
RACLPKCALQ ELKDTILEGS HPSAVSLKER SGLRFESQCE TRTPNGDGDS GAVAPRVDEG  180
TACGQVEAAK GDLIPLTAEN ENNLLPEDTT ERILLPYKRG LDDLPAKNLM GQFNPNVDSV  240
NYGGDSHSNA KRRKHDAFCS ITSIEPNPVS LHGKKLLEDS SRPSINECDL AKESQLGDLE  300
GSTMVSEDDH DKYVVSKRVE QITDVEHGEF EHNQTQIPFH SNKMPQNMPR DESHHDISVD  360
EAKDDDVEHW VEPNKSIGAA SDGSQQKTAV DEAKDDGDCR VEPNKSSGSS DESQKKNSVD  420
EAKDDGDHSS QPKASNDKLP NEAHHKVFVD EAKDDTEHCC EEEMLSDSTE YHDEEDGIAM  480
ERQNFLSSKC TFNHDSLSIA GWTEQNLCMK CTKDGQLLVC SSSGCPLVVH ENCLGCPPSF  540
DNMGNFYCPF CAYSRAVSEY LESKKKVSLA KKELASFINA GMKHEPVKPK KKHRKKNEKL  600
NESANLVKVC ENGHVKEKRQ TRANHGDAQV TDQLIRRNVE KHDGVEEQGV ANLGVQQEAL  660
QQQISDPLED PASGTSGDEN DKPSSSTYYI RFRRQQQQYT FPPIHQLRRK KLAWTAKEEE  720
ILKVGVQKFS NDHDKSIPWK KIMEFGGTVF QRGRTTIDLK DKWRNICKGS PKSK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.84090.0fruit| pedicel
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4420610.0AM442061.2 Vitis vinifera contig VV78X087658.7, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010653800.10.0PREDICTED: uncharacterized protein LOC100852566 isoform X1
TrEMBLD7THZ70.0D7THZ7_VITVI; Uncharacterized protein
STRINGVIT_08s0007g08160.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1443713
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.26e-06MYB_related family protein