PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01031762001
Common NameVIT_03s0063g00630
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family B3
Protein Properties Length: 364aa    MW: 40986.9 Da    PI: 7.6183
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01031762001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.42e-1643132299
                        EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                 B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                        +k ++ps+v+   +l lpkkf++ h  +k  ++t++l d++g +++ k+ + k++    l++GW++F  a++L egD++vF l++ ++f  +
  GSVIVT01031762001  43 IKSMLPSHVTGGFWLGLPKKFCDVHL-PK-YDTTIILVDKRGAEYKTKFLVGKTG----LSGGWRGFSIAHNLLEGDVLVFGLVQPTKF--M 126
                        6899******************8883.33.5579***************544444....************************987777..9 PP

                        EEEE-S CS
                 B3  94 vkvfrk 99 
                        v ++r+
  GSVIVT01031762001 127 VYIVRT 132
                        999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-1836133IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-2337136IPR015300DNA-binding pseudobarrel domain
CDDcd100176.02E-2440131No hitNo description
SMARTSM010191.9E-2142133IPR003340B3 DNA binding domain
PROSITE profilePS5086312.66142133IPR003340B3 DNA binding domain
PfamPF023622.8E-1443132IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MSSCKRIRVD TDHITNGNEA KSSVMERAEK VQRNLPSEIP SMIKSMLPSH VTGGFWLGLP  60
KKFCDVHLPK YDTTIILVDK RGAEYKTKFL VGKTGLSGGW RGFSIAHNLL EGDVLVFGLV  120
QPTKFMVYIV RTNGFDEFYI PQENTKKESL SVSTTELGLA ACQSENDSDG HGSEVLERIR  180
FSESAVDFKE VKSMEAFSIL VNGLIINSEF SKHLQTKYYE LCCSQKTYLH DHLLDGLNYK  240
LAAGIISETV NIADAIRASK LTTSRDNFSI WSKTLKAFQE LGMNVGFLRA RLDQLMSFGF  300
VENRKREARL ERVSAEEKIR DLEGSLLHVK EVRKRLNAEI EALDSPAAEK HEMMFQELAK  360
SSW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4458550.0AM445855.2 Vitis vinifera contig VV78X102978.13, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019074314.10.0PREDICTED: B3 domain-containing protein Os01g0234100
TrEMBLD7TPK60.0D7TPK6_VITVI; Uncharacterized protein
STRINGVIT_03s0063g00630.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7667818
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-39B3 family protein