PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01025193001
Common NameLOC100243208, VIT_06s0004g02800
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family HD-ZIP
Protein Properties Length: 845aa    MW: 92249 Da    PI: 6.211
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01025193001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.64.4e-182684357
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                       k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  GSVIVT01025193001 26 KYVRYTAEQVEALERVYLECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 84
                       56789****************************************************97 PP
2START157.88.3e-501653722204
                        HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEE CS
              START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..gal 91 
                        +aee+++e+++ka+ ++  Wv+++ +++g++++ +f+ s+++sg a+ra+g+v  ++    +e+l+d++ W +++++ e+      g  g++
  GSVIVT01025193001 165 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISHSCSGVAARACGLVSLEPS-KIAEILKDRPSWFRDCRSLEVFTMFPAGngGTV 255
                        7899******************************************************.7777777777***********999999999*** PP

                        EEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHH CS
              START  92 qlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphw 179
                        +l +++ +a+++l+p Rdf+++Ry+ +l  g++v++++S++     p+    +++vRae+lpSg+li+p+++g+s +++v+h +l+++++++
  GSVIVT01025193001 256 ELLYTQIYAPTTLAPaRDFWTLRYTTSLDNGSLVVCERSLSGSGAGPNtaaAAQFVRAEMLPSGYLIRPCEGGGSIIHIVDHLNLEAWSVPE 347
                        *****************************************98888888999**************************************** PP

                        HHHHHHHHHHHHHHHHHHHHTXXXX CS
              START 180 llrslvksglaegaktwvatlqrqc 204
                        +lr+l++s+++ ++k++ a+l++ +
  GSVIVT01025193001 348 VLRPLYESSRVVAQKMTIAALRYIR 372
                        ********************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.1752185IPR001356Homeobox domain
SMARTSM003894.4E-152389IPR001356Homeobox domain
SuperFamilySSF466892.14E-162488IPR009057Homeodomain-like
CDDcd000865.56E-162686No hitNo description
PfamPF000461.4E-152784IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.7E-182884IPR009057Homeodomain-like
CDDcd146861.78E-678117No hitNo description
PROSITE profilePS5084827.323155383IPR002913START domain
CDDcd088754.81E-71159375No hitNo description
Gene3DG3DSA:3.30.530.201.7E-19164356IPR023393START-like domain
SMARTSM002345.0E-41164374IPR002913START domain
SuperFamilySSF559613.3E-34164376No hitNo description
PfamPF018523.1E-47165372IPR002913START domain
SuperFamilySSF559616.81E-5412493No hitNo description
SuperFamilySSF559616.81E-5523608No hitNo description
PfamPF086707.3E-50700843IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010014Biological Processmeristem initiation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 845 aa     Download sequence    Send to blast
MAMAIAQQHR ESSSSGSINK HLDSGKYVRY TAEQVEALER VYLECPKPSS LRRQQLIREC  60
PILSNIEPKQ IKVWFQNRRC REKQRKEASR LQTVNRKLTA MNKLLMEEND RLQKQVSQLV  120
CENGYMRQQL QTASAATTDA SCESVVTTPQ HSLRDANNPA GLLSIAEETL AEFLSKATGT  180
AVDWVQMPGM KPGPDSVGIF AISHSCSGVA ARACGLVSLE PSKIAEILKD RPSWFRDCRS  240
LEVFTMFPAG NGGTVELLYT QIYAPTTLAP ARDFWTLRYT TSLDNGSLVV CERSLSGSGA  300
GPNTAAAAQF VRAEMLPSGY LIRPCEGGGS IIHIVDHLNL EAWSVPEVLR PLYESSRVVA  360
QKMTIAALRY IRQIAQETSG EVVYGLGRQP AVLRTFSQRL SRGFNDAING FNDDGWSLMS  420
CDGAEDVIIA VNSTKNLNTT SNPANSLSLP GGVLCAKASM LLQNVPPAVL VRFLREHRSE  480
WADFSVDAYS AASLKASPYS YPGMRPTRFT GSQIIMPLGH TIEHEELLEV IRLEGHSLAH  540
EDAFMSRDIH LLQICSGVDE NAVGACSELV FAPIDEMFPD DAPLLPSGFR IIPLDSKSGD  600
TQETLTTHRT LDLTSSLEVG PATNQAAGDS SSCYNTRSVL TIAFQFPFES NLQDNVATMA  660
RQYVRSVISS VQRVAMAISP SGLGPAVGPK LSAGSPEALT LAHWICQSYS YHVGAELLRS  720
DSVGGDSVLK NLWHHQDAIL CCSLKSLPVL IFANQAGLDM LETTLVALQD ISLDKIFDES  780
GRKGLCADFA KIMQQGFAYL PAGICMSTMG RHVSYEQAIA WKVLAAEENT VHCLAFSFIN  840
WSFV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.149080.0cell culture| fruit| inflorescence| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed at the earliest stages and throughout LSM initiation and development. In embryo development, expressed at the heart stage until the 'walking stick' stage in the adaxial portion of the cotyledon primordia, the shoot apical meristem (SAM) and the vascular precursor cells of the hypocotyl and root. In developing flowers, expressed first at stage 1 in the center of L3 layer and then expands to the center of L2 and L1 layers. Expressed in the center of flower meristem through stages 4 and 5. At stage 6, expressed in the adaxial side of the carpel primordia and then on the adaxial carpel face. {ECO:0000269|PubMed:11169198}.
UniprotTISSUE SPECIFICITY: Expressed in the interfascicular regions of stem and vascular bundles of young roots and leaves. {ECO:0000269|PubMed:10559440}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010651164.10.0PREDICTED: homeobox-leucine zipper protein REVOLUTA
RefseqXP_019076130.10.0PREDICTED: homeobox-leucine zipper protein REVOLUTA
SwissprotQ9SE430.0REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBLD7SKZ00.0D7SKZ0_VITVI; Uncharacterized protein
STRINGVIT_06s0004g02800.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6511671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Lian H,Li X,Liu Z,He Y
    HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis.
    J. Exp. Bot., 2013. 64(11): p. 3397-410
    [PMID:23918970]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Shi B, et al.
    Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis.
    PLoS Genet., 2016. 12(7): p. e1006168
    [PMID:27398935]