PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01014844001
Common NameVIT_19s0015g01780
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C2H2
Protein Properties Length: 462aa    MW: 50111.4 Da    PI: 6.5498
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01014844001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.00147797323
                       ETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                       C+ C++ Fs+   L  H+r+H
  GSVIVT01014844001 77 CSVCKREFSSGKALGGHMRVH 97
                       *******************99 PP
2zf-C2H213.10.00029134153221
                        EETTTTEEESSHHHHHHHHH CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                        +C+ Cgk F+++ +L  H+r
  GSVIVT01014844001 134 TCSLCGKNFPSRKSLFGHMR 153
                        7******************8 PP
3zf-C2H214.30.00012320342123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        y+C+ C+ksF+++  L  H ++H
  GSVIVT01014844001 320 YRCSTCNKSFPTHQALGGHRSSH 342
                        9***************9999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.27597IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.22475102IPR007087Zinc finger, C2H2
PfamPF139128.3E-97597IPR007087Zinc finger, C2H2
PROSITE patternPS0002807797IPR007087Zinc finger, C2H2
SMARTSM003550.0045133155IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.533133160IPR007087Zinc finger, C2H2
PfamPF139124.9E-7134157IPR007087Zinc finger, C2H2
SuperFamilySSF576671.69E-9134155No hitNo description
PROSITE patternPS000280135155IPR007087Zinc finger, C2H2
SuperFamilySSF576671.69E-9315342No hitNo description
PfamPF139127.7E-10319343IPR007087Zinc finger, C2H2
SMARTSM003550.014320342IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.866320347IPR007087Zinc finger, C2H2
PROSITE patternPS000280322342IPR007087Zinc finger, C2H2
PfamPF139125.3E-11376400IPR007087Zinc finger, C2H2
SuperFamilySSF576672.15E-5376401No hitNo description
SMARTSM003550.24377399IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.328377399IPR007087Zinc finger, C2H2
PROSITE patternPS000280379399IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MTLDWDSSSG FASMDDDQKK DYCKILEGGG REDHVALEKG ALKEKPAAAN GGPMMKLKHQ  60
SSWELNGEDN VREPRICSVC KREFSSGKAL GGHMRVHIQA SKKEDELVNK KTAKLKKQSV  120
NGPGSTTNNA DDTTCSLCGK NFPSRKSLFG HMRCHPEREW RGIQPPPTAK NSSSSTLSEL  180
LPRIMDDQFD SATTVTKCVT DLQQSLSGSG WSVTDRRGRK SFLPDADSDA DADAAYNLLM  240
LGHGDFLYLG HPPHSYQQQQ RVKEECESNS PTNKAEIEEN NQYFECTAGS KKRGIEASLF  300
GNMKNSPEEA KQVPTTPDRY RCSTCNKSFP THQALGGHRS SHNKFKNSQT MDDSASHEAL  360
GCNDAAAALA SMLSTTHQCK CCNKTFPTGQ ALGGHMRCHW NGPSEAPSSQ VTSPGEASQT  420
GPKLLLGFDL NELPAMDEED EGTESVTLAA GDASSSHNSV N*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4434160.0AM443416.1 Vitis vinifera contig VV78X083609.33, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010644683.10.0PREDICTED: uncharacterized protein LOC104877642 isoform X1
TrEMBLD7UAU20.0D7UAU2_VITVI; Uncharacterized protein
STRINGVIT_19s0015g01780.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1379534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.15e-19C2H2 family protein