PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01013168001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C2H2
Protein Properties Length: 238aa    MW: 26586.8 Da    PI: 4.7214
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01013168001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.00012102124123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        y+C+ C + F++   L  H+++H
  GSVIVT01013168001 102 YTCTFCRREFRSAQALGGHMNVH 124
                        9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.55E-699129No hitNo description
PfamPF139121.8E-5102125IPR007087Zinc finger, C2H2
SMARTSM003550.0066102124IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.157102129IPR007087Zinc finger, C2H2
PROSITE patternPS000280104124IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MIIMEIAPLI FIFEFGFLHY LLDFSPYLNE EEIKLHETFE SVNIWGVKAN VRDCPYMEKI  60
ASCVGKLIFI CKSQEDDDSW EVRAFAEDTG NIMGTTWPPR SYTCTFCRRE FRSAQALGGH  120
MNVHRRDRAR LHQTHPGSNN PTSSSSTNSS STLIIPTQEF ITNGGLCLLY QLPPNPNALF  180
TPTSINSCIA LCPSSKPEPS AVSNGDDDNE NTSNNYNDSA MEELDLELRL GHRPSPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-1397124229superman protein
2l1o_A1e-1397124229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM4533330.0HM453333.1 Vitis vinifera palmate-like pentafoliata 1 transcription factor (PALM1) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002278326.11e-98PREDICTED: transcriptional regulator SUPERMAN
TrEMBLF6HT981e-101F6HT98_VITVI; Uncharacterized protein
STRINGVIT_02s0012g01190.t011e-102(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5761581
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.13e-38C2H2 family protein